Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6l23
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0790 + 25253363-25254136,25259037-25259897                       37   0.012
07_03_1152 + 24392765-24392908,24393682-24393899,24394340-243944...    30   1.4  
05_07_0074 - 27509124-27509199,27509613-27512143                       30   1.9  
07_01_0864 - 7185070-7185141,7185274-7185402,7185585-7185695,718...    28   7.5  
02_01_0581 - 4307182-4307358,4307387-4307461,4307559-4307621,430...    28   7.5  
01_06_0746 - 31636024-31641396                                         27   9.9  

>01_05_0790 + 25253363-25254136,25259037-25259897
          Length = 544

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = +1

Query: 166 ALQFLLYLPIGVILMVIRIFLGVIL 240
           AL F L+LP+GVIL VIRI +G++L
Sbjct: 298 ALAFFLFLPLGVILSVIRISIGILL 322


>07_03_1152 +
           24392765-24392908,24393682-24393899,24394340-24394454,
           24394605-24394694,24394857-24395015,24395462-24395581,
           24396173-24396283,24396531-24396615,24397439-24397575
          Length = 392

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = -3

Query: 465 RCEKWWQLPSFQTYGTKDMCSCKRIETCHIVSNQHT---TSWVSLSFELHIDTKSPTSQS 295
           + E W +   ++     D+  CK I   H     HT    +W+S+SF++H+   S   + 
Sbjct: 282 KVESWLEDLLWERKLDMDIYRCKGILHVHNSDQVHTLQVATWISISFKIHLVVASTDIEG 341

Query: 294 S*HVTDC 274
             H   C
Sbjct: 342 FVHPVPC 348


>05_07_0074 - 27509124-27509199,27509613-27512143
          Length = 868

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +1

Query: 355 CSVLVANYVTCFDSLAAAHVFGTISLKRWKLPPFFASTLGIKNASQFSKK 504
           C +LV    +  D+  A HV GTI   R K  P F   L I +   +  K
Sbjct: 556 CEILVTAQFSPLDTKVAQHVKGTIRSLRKKTDPLFFEPLDIASYGLYIDK 605


>07_01_0864 -
           7185070-7185141,7185274-7185402,7185585-7185695,
           7186114-7186292,7186479-7186576,7186691-7186956,
           7187895-7188050,7188131-7188319,7188711-7188824,
           7189131-7189273,7189683-7189818,7189954-7190058
          Length = 565

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +2

Query: 485 PHNFLKSNISLRCQQSLC*YNQKVDPRTVKRCYVSQIGHSRLKSNVQPVAITV 643
           P++ ++S +    QQ L    + +DP  +    ++Q+  +RLKS+ + V I V
Sbjct: 194 PYSEIESILREELQQPLDSVYEYIDPVPIASASIAQVHGARLKSSQKDVVIKV 246


>02_01_0581 -
           4307182-4307358,4307387-4307461,4307559-4307621,
           4307715-4307819,4307917-4308024,4308123-4308260,
           4308357-4308446,4308533-4308658,4308728-4308781,
           4308865-4308936,4309060-4309167,4309272-4309343,
           4309456-4309518,4309747-4309908
          Length = 470

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = -2

Query: 586 NVTPLYRSWVHFLVVSTQALLAPQRNVAF*KIVRRSLYPTSMRKMVATSIFSNLWYQRH 410
           ++T LYR       V  Q L  PQ+     KI+ R L P+ + +   + IF + W Q H
Sbjct: 212 SLTNLYRRISRAQFVFPQWLSVPQK-----KIIIRILDPSPITRAKISDIFDDKWLQDH 265


>01_06_0746 - 31636024-31641396
          Length = 1790

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 169 LQFLLYLPIGVILMVIRIFLGVILWIASIILPNKWAVSHMLT 294
           L +L    + VI  V+ I L +I WI + +    W + ++LT
Sbjct: 435 LNYLEAAAVFVIPQVLAIVLFIIPWIRNFLEKTNWKILYVLT 476


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,647,599
Number of Sequences: 37544
Number of extensions: 446008
Number of successful extensions: 959
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)