Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6l23
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23648-6|AAA28032.2|  390|Caenorhabditis elegans Hypothetical pr...    68   5e-12
Z78410-9|CAB01637.2|  304|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z29094-7|CAA82342.2|  453|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF045642-10|AAC02587.1|  459|Caenorhabditis elegans Hypothetical...    28   6.7  
AF016433-10|AAB65387.1|  338|Caenorhabditis elegans Seven tm rec...    28   6.7  
Z92784-3|CAB07194.1|  318|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AL132943-2|CAC14392.1|  367|Caenorhabditis elegans Hypothetical ...    27   8.9  

>L23648-6|AAA28032.2|  390|Caenorhabditis elegans Hypothetical
           protein F44B9.5 protein.
          Length = 390

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 9/173 (5%)
 Frame = +1

Query: 118 LAAEKLINKERFNGENALQF-LLYLPIGVILMVIRIFLGVILWIASIILPNKWAVSHMLT 294
           L  E L +++R     A  F ++Y P+G+I+++IR+FLG   +I + +L    A+     
Sbjct: 15  LRIEDLFHQKRNEDTIAKIFSIIYAPVGLIILLIRVFLGFHTFIVACLLRKSAALRMHTL 74

Query: 295 TLACWTFGVYVKLKGQRDPRCSVLVANYVTCFDSLAAAHVFGTISLKRWKLPPFFASTLG 474
            + C   G+ V+  G RD    VL AN+V+  D LA   +   +    W +P       G
Sbjct: 75  RIMCSILGIVVEKSGHRDESARVLCANHVSILDHLAVDILTPCLLPSVWDIPSIIRWCFG 134

Query: 475 ------IKNASQF-SKKQHFSEVPTKPVLIQPESGPTNG-KAVLRFTDWPFQI 609
                  +   Q  S+ +        P+L  PE   T+G KA+++F  W F++
Sbjct: 135 YVDLGATRGRDQLVSRAKQLLTREQMPLLAFPEGIITSGEKALIKFNTWCFEV 187


>Z78410-9|CAB01637.2|  304|Caenorhabditis elegans Hypothetical
           protein C51E3.5 protein.
          Length = 304

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 199 VILMVIRIFLGVILWIASIILPNKWAVSHMLTTLACWTFGVYV 327
           +I++ + IF  VI+ I   + P   +  H+L TL C   G++V
Sbjct: 17  LIIIPVGIFSNVIMIICFFVNPRLRSPFHILLTLTCLADGIHV 59


>Z29094-7|CAA82342.2|  453|Caenorhabditis elegans Hypothetical
           protein C07A9.8 protein.
          Length = 453

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 523 PTKPVLIQPESGPTNGKAVLRFTDWPFQI 609
           P   V+ +P+  P     +  FTDWPF+I
Sbjct: 7   PKCVVIEEPDDVPVKPPKIFDFTDWPFEI 35


>AF045642-10|AAC02587.1|  459|Caenorhabditis elegans Hypothetical
           protein C17H12.9 protein.
          Length = 459

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 474 TQRRCEKWWQLPSFQTYGTKDMCSCKRIE 388
           T RR  KW + P FQ      + +CKR E
Sbjct: 280 TFRRMAKWLEEPEFQRMSALRLAACKRKE 308


>AF016433-10|AAB65387.1|  338|Caenorhabditis elegans Seven tm
           receptor protein 130 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 20/99 (20%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
 Frame = +1

Query: 178 LLYLPIGVI-LMVIRIFLGVILWIASIILPNKWAVSHMLTTLACWTFGVYVKLKGQRDPR 354
           ++Y  I ++ L V+ +    IL+  + +L +  +   +++T+ C +F   + +       
Sbjct: 52  IIYATIEILTLPVMHLHGSGILFYVNSVLKDHISAGVIISTMYCGSFAFCISMLATH--- 108

Query: 355 CSVLVANYVTCFDSLAAAHVFGTISLKRWKLPPFFASTL 471
               +  Y+    +    H F  I++  W +PPFF  T+
Sbjct: 109 ---FIFRYIAVCKN-NKLHYFEGINVYLWLIPPFFFFTI 143


>Z92784-3|CAB07194.1|  318|Caenorhabditis elegans Hypothetical
           protein F31C3.4 protein.
          Length = 318

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +1

Query: 202 ILMVIRIFLGVILWIASIILPNKWAVSHMLTTLACWTFGVYV 327
           +L+++   L     + +  L  +WA SH+L+ ++C   GV++
Sbjct: 35  VLLIVLFALTFAAGMIATFLKGEWARSHILSFISCIGGGVFL 76


>AL132943-2|CAC14392.1|  367|Caenorhabditis elegans Hypothetical
           protein Y116F11B.5 protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 20/76 (26%), Positives = 36/76 (47%)
 Frame = +1

Query: 40  SRIL*KIYGRQRKYSTKHLSTYSVMALAAEKLINKERFNGENALQFLLYLPIGVILMVIR 219
           S+I+   Y          + TY  +A+A  + +   +F    ++Q L+Y   G+ +++  
Sbjct: 112 SKIVSNYYSSMTNAVVTGMLTYFTVAMAIIRFL-VVKFPFARSMQRLIYSKSGLKILLPI 170

Query: 220 IFLGVILWIASIILPN 267
           I L + LWIA I   N
Sbjct: 171 IILILPLWIAEISSTN 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,296,137
Number of Sequences: 27780
Number of extensions: 412567
Number of successful extensions: 1094
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)