Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6l13
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    57   2e-09
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    26   5.0  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    26   5.0  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    25   8.7  

>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
 Frame = +2

Query: 377 WGTYRPGVYLGMKSREPWSPVFGLMWYELAAAAQ-KGIRHWCDQGDNLPTYGWLRHDGVT 553
           WG YRP +Y+G++ + P S + GLMW  +   A+   +RH  + GD++  +GW  +D   
Sbjct: 44  WGPYRPNLYVGIRPKIPDSLMTGLMWSNVDDYARFSKMRHSAEHGDDIGAFGWKHYDVRR 103

Query: 554 FGEQLISD--PPHQIVTSFVK 610
            G+Q+I D     ++ T FVK
Sbjct: 104 GGQQVIDDFLMGIKLETDFVK 124


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 447 RPKTGDHGSRLFIPKYTPGLYVPQYRSGTSRP 352
           + ++G H +R+++PK    +Y    R+   RP
Sbjct: 197 KDRSGSHVNRIYVPKAEQEMYEYYVRAAKERP 228


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 593 QSDEGGPISAVLRKSHHHVGASHT*VSCHPDRTSV*FLFE 474
           +S+ G PI A+   S +HV      VS   DR  + +L++
Sbjct: 13  ESENGSPIPALEEGSVYHVSLKSEGVSPFSDRIQLNYLYD 52


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 381 PQYRSGTSRPDFCTTLTSSNGVFTLVSK*PTTPPYMATTKHIKP 250
           P  R+ T+RP     +T+++G  +  S  P+     A+TK ++P
Sbjct: 239 PPTRTSTTRPLSRVNVTNASGSISKNSTSPSKVKVNASTKIVRP 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,553,357
Number of Sequences: 5004
Number of extensions: 51648
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)