Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6l13
         (615 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1834 + 40214378-40214563,40214728-40214818,40215006-402150...    84   7e-17
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    29   2.9  
05_06_0273 - 26851077-26851167,26851433-26851869,26852125-268522...    29   3.9  
12_01_0019 - 135627-135983,136564-136797,137118-137196,137268-13...    28   6.8  
11_01_0021 - 143576-143932,144434-144667,144988-145066,145138-14...    28   6.8  
03_05_0337 - 23272845-23273271,23273318-23273526,23275615-23276298     28   6.8  

>01_06_1834 +
           40214378-40214563,40214728-40214818,40215006-40215093,
           40215444-40215695,40215927-40216101,40216243-40216329,
           40216445-40216513,40216638-40216734,40217010-40217092,
           40217373-40217480,40217672-40217793,40217921-40218028,
           40218121-40218194,40218492-40218617,40219655-40219722,
           40219930-40220079,40220164-40220214,40220678-40220734,
           40220824-40220970,40221064-40221155,40221516-40221625,
           40221728-40221791,40221883-40222032,40222554-40222788
          Length = 929

 Score = 84.2 bits (199), Expect = 7e-17
 Identities = 40/93 (43%), Positives = 53/93 (56%)
 Frame = +2

Query: 332 VKVVQKSGLEVPDRYWGTYRPGVYLGMKSREPWSPVFGLMWYELAAAAQKGIRHWCDQGD 511
           V  +Q  G      YWGTYRP VYLG+++R P S + G+MW   A   Q  +RH C   D
Sbjct: 93  VDCLQFQGDHKESLYWGTYRPNVYLGIRARTPLSLIAGIMWIG-AKNGQYFLRHVCQDSD 151

Query: 512 NLPTYGWLRHDGVTFGEQLISDPPHQIVTSFVK 610
            L TYGW  H+G  +G Q++ D    + TSF+K
Sbjct: 152 ELSTYGWTDHNGRDYGHQVLVDHGLLLTTSFLK 184


>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = -1

Query: 408  PKYTPGLYVPQYRSGTSRPDFCTTLTSSNGVFTLVSK*PTTPPYMATTKHIKPT 247
            P Y+P    P Y    + P +  T  S N   T  S  PT+P Y  T+    PT
Sbjct: 1711 PSYSPTS--PSYSYSPTSPSYSPTSPSYNYSPTSPSYSPTSPSYSPTSPSYSPT 1762


>05_06_0273 - 26851077-26851167,26851433-26851869,26852125-26852271,
            26852352-26854415,26854792-26854908,26855007-26855093,
            26855350-26855439,26855523-26855609,26856736-26856810
          Length = 1064

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -1

Query: 444  PKTGDHGSRLFIPKYTPGLYVP--QYRSGT 361
            PK G HG    I ++ PG+YV   Q R GT
Sbjct: 997  PKYGTHGEVQLIEQFEPGVYVTLIQLRDGT 1026


>12_01_0019 -
           135627-135983,136564-136797,137118-137196,137268-137383,
           137847-137991,138177-138594,138644-138649,139315-139945
          Length = 661

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 272 AIYGGVVGYLETRVNTPFDDVKV-VQKSGLEVPD 370
           A+ GG+   L T V  P D +K  VQ S L  PD
Sbjct: 379 ALAGGLASALSTSVMHPIDSMKTRVQASSLSFPD 412


>11_01_0021 -
           143576-143932,144434-144667,144988-145066,145138-145253,
           145717-145861,146048-146465,147206-147869
          Length = 670

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 272 AIYGGVVGYLETRVNTPFDDVKV-VQKSGLEVPD 370
           A+ GG+   L T V  P D +K  VQ S L  PD
Sbjct: 388 ALAGGLASALSTSVMHPIDSMKTRVQASSLSFPD 421


>03_05_0337 - 23272845-23273271,23273318-23273526,23275615-23276298
          Length = 439

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +2

Query: 422 EPWSPVFGLMWYELAAAAQKGIRHWCDQGD 511
           E W    G MW E  AAA + IR   D GD
Sbjct: 209 ETWRMAAGGMWPEFTAAAAQNIRLVIDIGD 238


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,637,227
Number of Sequences: 37544
Number of extensions: 340091
Number of successful extensions: 716
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)