Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6l11
         (628 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF120989-1|AAD56596.1|  302|Homo sapiens testis-specific methyl-...    38   0.038
AF072246-1|AAC68875.1|  146|Homo sapiens testis specific methyl-...    38   0.038

>AF120989-1|AAD56596.1|  302|Homo sapiens testis-specific methyl-CpG
           binding protein 2 protein.
          Length = 302

 Score = 37.5 bits (83), Expect = 0.038
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
 Frame = -1

Query: 274 SHYPAPQNKSSLICLVLR---CAHVSYPIQVIFIDSASS--NYYCIYIWQIAYDY 125
           +H PAP +  S +CL++R   C   +YP+ +  ++S SS    +C+++W+    Y
Sbjct: 239 THRPAPWHALSRLCLLIRCLLCLECAYPLPLHLVNSYSSKTQLHCLHLWEACPAY 293


>AF072246-1|AAC68875.1|  146|Homo sapiens testis specific methyl-CpG
           binding protein MBD2 protein.
          Length = 146

 Score = 37.5 bits (83), Expect = 0.038
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
 Frame = -1

Query: 274 SHYPAPQNKSSLICLVLR---CAHVSYPIQVIFIDSASS--NYYCIYIWQIAYDY 125
           +H PAP +  S +CL++R   C   +YP+ +  ++S SS    +C+++W+    Y
Sbjct: 83  THRPAPWHALSRLCLLIRCLLCLECAYPLPLHLVNSYSSKTQLHCLHLWEACPAY 137


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,075,852
Number of Sequences: 237096
Number of extensions: 1793186
Number of successful extensions: 9258
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9256
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6804036910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)