Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6l09
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    29   0.39 
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   1.6  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    27   2.7  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   8.3  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    25   8.3  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 159  LIFGGNCNTLLGEVLGLFICCCNSSNRNC 245
            L FG   ++LL +VL  F  CC+ S  NC
Sbjct: 2025 LSFGFKESSLLSQVLDSFFLCCSGSLSNC 2053



 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 94   PHERMRGFIELAWAFSTVLGLFLF 165
            PH R R F  L+W  +T+  ++ F
Sbjct: 4037 PHNRFRLFFFLSWLHATLAEIYCF 4060


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 545  QIQEILSLHCSIITMVSLGHFGLTASIINNYYIKFIT 435
            +I+ +L L C+I  + SLGH  ++  +    YI  I+
Sbjct: 1315 KIENLLVLQCAISVVSSLGHEHISCVLTQGAYIDLIS 1351


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 211 NNPKTSPSRVLQFPPKIRTNLKLY*MPKPVL*NPSFAHE 95
           NNP T PS +       +++L L+ +P P   +  FAH+
Sbjct: 234 NNPDTLPSNIAPMGTLSKSSLPLHHIPWPPNQHIKFAHD 272


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 203  QNF-TQQSIAISTKNKNKPKTVLNAQASSIKPLIRS 99
            QNF  + S AIST  K +PK     +  S KP ++S
Sbjct: 1203 QNFGIKSSPAISTNGKTQPKKQTANRRQSGKPNVKS 1238


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -3

Query: 138 KCPSQFYKTPHSLMR*IPQSSCRTTGRFHFA 46
           KC +   K PH LMR    SS   T  F  A
Sbjct: 50  KCTNPESKVPHFLMRMAKDSSISATSMFRSA 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,872
Number of Sequences: 5004
Number of extensions: 45818
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)