Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6l09
(593 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U22832-1|AAA64507.1| 293|Caenorhabditis elegans Hypothetical pr... 62 4e-10
AF039046-5|AAB94217.1| 68|Caenorhabditis elegans Caenacin (cae... 31 0.47
U64844-11|AAB18311.1| 482|Caenorhabditis elegans Hypothetical p... 29 2.5
AC006674-12|AAO38617.1| 357|Caenorhabditis elegans Hypothetical... 29 3.3
AC006674-11|AAF39936.1| 309|Caenorhabditis elegans Hypothetical... 29 3.3
U00056-1|AAN65308.2| 476|Caenorhabditis elegans Hypothetical pr... 28 4.4
U64839-1|AAB04844.2| 399|Caenorhabditis elegans Acyltransferase... 28 5.8
U10401-10|AAA19062.2| 476|Caenorhabditis elegans Hypothetical p... 28 5.8
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein. 27 7.6
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei... 27 7.6
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :... 27 7.6
>U22832-1|AAA64507.1| 293|Caenorhabditis elegans Hypothetical
protein C09F5.2 protein.
Length = 293
Score = 61.7 bits (143), Expect = 4e-10
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 1/124 (0%)
Frame = +1
Query: 1 ALMISTYLLPNIDAVSKMETPGGPTRALRDSPHERMRGFIELAWAFSTVLGLFLFLVEIA 180
ALM+ST +LP ++A T +DSPH +++ +I+L+W FST +GL LFLVEI
Sbjct: 165 ALMMSTCILPYMEA----------TGCTQDSPHIKLKFYIDLSWLFSTCIGLLLFLVEIG 214
Query: 181 ILCWVKFWDYSF-XXXXXXXXXXXPVLIVFVAFAIHFYHSLVVQKCETTVKDIEQLENMK 357
++ +VKF + PV +VFV F+ + H V K +++ MK
Sbjct: 215 VIFYVKFTAVGYPTAGYITTAMLVPVGVVFVVFS-YLIHKNRVSHSLGRFK--HKVDTMK 271
Query: 358 RDLD 369
+ LD
Sbjct: 272 QFLD 275
>AF039046-5|AAB94217.1| 68|Caenorhabditis elegans Caenacin
(caenorhabditis bacteriocin)protein 5 protein.
Length = 68
Score = 31.5 bits (68), Expect = 0.47
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +3
Query: 57 NARWSYKSSEGFTS*ANEGFYRTGLGI*YSFRFVLIFGGNCNTLLGEVLG 206
+A+W Y S G+ S N G Y G Y L GG L+G +LG
Sbjct: 17 SAQWGYNSYGGYNSYGNYGGYGGGYNNGYGVNANLGVGGRGGGLVGGLLG 66
>U64844-11|AAB18311.1| 482|Caenorhabditis elegans Hypothetical
protein T22F3.8 protein.
Length = 482
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Frame = -1
Query: 542 IQEILSLHCSIITMVSL------GHFGLTASIINNYYIKFITV 432
IQ + +LHC T +L G GLT ++NNYY +FI +
Sbjct: 3 IQTLFTLHCLYRTFFNLKVAFFLGSAGLTMMLLNNYY-RFIVL 44
>AC006674-12|AAO38617.1| 357|Caenorhabditis elegans Hypothetical
protein K12H6.6b protein.
Length = 357
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -1
Query: 470 SIINNY-YIKFITVEKLS*ITLVIQLYMFTLTVAVSRSLFIFSSCSMS 330
S++N Y + K +T +++ I +I L +F L V V F+F+S SMS
Sbjct: 190 SLMNLYGFDKKLTAFRVTVILNIITLVVFRLIVNVYMIYFVFASFSMS 237
>AC006674-11|AAF39936.1| 309|Caenorhabditis elegans Hypothetical
protein K12H6.6a protein.
Length = 309
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -1
Query: 470 SIINNY-YIKFITVEKLS*ITLVIQLYMFTLTVAVSRSLFIFSSCSMS 330
S++N Y + K +T +++ I +I L +F L V V F+F+S SMS
Sbjct: 190 SLMNLYGFDKKLTAFRVTVILNIITLVVFRLIVNVYMIYFVFASFSMS 237
>U00056-1|AAN65308.2| 476|Caenorhabditis elegans Hypothetical
protein R05H11.1 protein.
Length = 476
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = -1
Query: 548 IQIQEILSLHCSIITMVSLGHFGLTASIINNYYIKFITVE 429
I +E+LSL+C IT V +GH LTA +N + ++++ ++
Sbjct: 245 ISREELLSLNC--IT-VDIGHNNLTADDLNAFLLQWMFID 281
>U64839-1|AAB04844.2| 399|Caenorhabditis elegans
Acyltransferase-like protein 9 protein.
Length = 399
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 55 ETPGGPTRALRDSPHERMRGFIELAWAFSTVLGLFLFLVEIAILCW 192
+TP G L ++ +G I W F+TV +F+F + W
Sbjct: 311 DTPDGVEYELDNNTDRAQKGLIGF-WCFTTVFWMFMFFESAFMFYW 355
>U10401-10|AAA19062.2| 476|Caenorhabditis elegans Hypothetical
protein T20B12.9 protein.
Length = 476
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 130 WAFSTVLGLFLFLVEIAILCWVKFWD 207
W +V+ +F LVE+AI+C + W+
Sbjct: 288 WMIFSVIFIFCTLVELAIVCQLNRWE 313
>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
Length = 1475
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 250 PVLIVFVAFAIHFYHSLVVQKCETTVKDIEQLENMKRDLDTATVKVNMYN*ITK 411
P +I+ V + ++S++V + + E + RDL +T V +YN + K
Sbjct: 1064 PTVILIVIQIVAVFNSIIVSIATKQMFESEVRHYLHRDLRGSTTAVRVYNLVQK 1117
>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
protein.
Length = 1475
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 250 PVLIVFVAFAIHFYHSLVVQKCETTVKDIEQLENMKRDLDTATVKVNMYN*ITK 411
P +I+ V + ++S++V + + E + RDL +T V +YN + K
Sbjct: 1064 PTVILIVIQIVAVFNSIIVSIATKQMFESEVRHYLHRDLRGSTTAVRVYNLVQK 1117
>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform a
protein.
Length = 1475
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 250 PVLIVFVAFAIHFYHSLVVQKCETTVKDIEQLENMKRDLDTATVKVNMYN*ITK 411
P +I+ V + ++S++V + + E + RDL +T V +YN + K
Sbjct: 1064 PTVILIVIQIVAVFNSIIVSIATKQMFESEVRHYLHRDLRGSTTAVRVYNLVQK 1117
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,939,314
Number of Sequences: 27780
Number of extensions: 260824
Number of successful extensions: 699
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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