Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6l09
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    29   0.045
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   9.1  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 28.7 bits (61), Expect = 0.045
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
 Frame = +1

Query: 19  YLLPNIDAVSKMETPGGPTRALRDSPHERMRGFIELAWAFSTVLGLFLFLVE-----IAI 183
           YL P + A+S+ +  G P R L     E     +++++      G FL  V      I +
Sbjct: 202 YLCPGM-ALSQFDLMGSPYRNLTFVRREGEFSVLQVSFNLQRHTGYFLIQVYVPCVLIVV 260

Query: 184 LCWVKFW 204
           L WV FW
Sbjct: 261 LSWVSFW 267


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
 Frame = +1

Query: 118 IELAWAFSTVLGLFLFLVEI-----AILCWVKFW 204
           +E+ +     LG +LF   I      I+ WV FW
Sbjct: 234 LEVVFVLKRRLGYYLFHTYIPTCLIVIMSWVSFW 267


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 320 VSHFCTTSE**KCIANATKTINT 252
           ++  C T+E    + N T TINT
Sbjct: 819 INDHCVTTEQSVVVTNVTTTINT 841


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 145 VLGLFLFLVEIAILCWVKFW 204
           V   +L  + I +L WV FW
Sbjct: 245 VFQTYLPSILIVMLSWVSFW 264


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,214
Number of Sequences: 438
Number of extensions: 3722
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)