Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6l04
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    64   1e-11
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   4.2  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    25   5.5  
SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...    25   9.6  

>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 64.1 bits (149), Expect = 1e-11
 Identities = 33/75 (44%), Positives = 50/75 (66%)
 Frame = +2

Query: 323 NLQYLALTGNTLGVTAAHAISKALESHPELKIARFSDMFTGRMKTEIPPALSALGDGMIA 502
           +++ + L+GNT+G  AA  +S+ + S  +L+IA FSD+FTGR+K EIP AL  L   ++ 
Sbjct: 33  SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK 92

Query: 503 AGARLAVLDLSDNAF 547
              +L  + LSDNAF
Sbjct: 93  C-PKLHTVRLSDNAF 106


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 305  AINKCPNLQYLALTGNTLGVTAAHAISKALESH-PELKIARFSDMFT 442
            ++ K P L+YL L+GNT    + H  +   +S+   LK     D+ T
Sbjct: 924  SLTKLPQLEYLNLSGNTWFRFSEHEDTNFTKSYLKNLKFLSIMDLNT 970


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 137 FCFVYFYFTFLGYVVDDFFTCASSEFQIN 51
           F F+Y   TF+G +   F T   +E  ++
Sbjct: 431 FIFLYLMLTFIGIIFSTFMTSEDAELVLS 459


>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 191 ILIRFGLEIIAIVPNLILNE 250
           +LI FG +I+AIVP  +  E
Sbjct: 77  LLIEFGTKILAIVPGRVSTE 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,015,329
Number of Sequences: 5004
Number of extensions: 37382
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)