Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6l04
(547 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0263 + 26752759-26754393 33 0.15
10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018 29 1.8
11_01_0681 - 5568312-5568328,5569057-5569213,5569321-5569482,556... 29 3.2
09_04_0524 + 18321110-18323978,18324098-18324576 29 3.2
06_03_1222 - 28521799-28521900,28521952-28522029,28522292-285243... 28 5.6
06_03_1056 + 27239176-27242361 28 5.6
07_03_0486 - 18634813-18635168,18635258-18638726 27 7.4
05_06_0133 + 25905455-25905545,25905650-25906202,25906310-259068... 27 7.4
04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203 27 7.4
11_06_0709 - 26487235-26487423,26488003-26488081,26488164-26488375 27 9.8
07_01_0375 - 2790287-2790675,2790843-2793783 27 9.8
>05_06_0263 + 26752759-26754393
Length = 544
Score = 33.1 bits (72), Expect = 0.15
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 296 IVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSDM 436
+ +A+ C L+ L L N GV A A+SK L P+L SD+
Sbjct: 319 LAEALGTCTRLKKLDLRDNLFGVEAGLALSKTLSKLPDLVELYLSDL 365
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 323 NLQYLALTGNTLGVTAAHAISKALESHPELKIARFSDMFTG 445
NL+ L + + + AA A+S+ + S +LKI F + TG
Sbjct: 244 NLEELYVMNDGISEEAAQALSELIPSTEKLKILHFHNNMTG 284
>10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018
Length = 1040
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +2
Query: 260 YLHQA*IVSAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISK 388
Y+H + A + DAI+ C +L L + GN+L T +ISK
Sbjct: 526 YMHNNKLAGA--LPDAISSCQSLMELRMDGNSLNSTIPVSISK 566
>11_01_0681 -
5568312-5568328,5569057-5569213,5569321-5569482,
5569524-5570546
Length = 452
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 311 NKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSDMF 439
+ CP LQ+L + G L + A IS H + FSD F
Sbjct: 230 SSCPVLQHLEIAGCDLSDSNARKISSLSIKHLNISGCNFSDTF 272
>09_04_0524 + 18321110-18323978,18324098-18324576
Length = 1115
Score = 28.7 bits (61), Expect = 3.2
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Frame = +2
Query: 296 IVDAINKCPNLQYLALTGNTLGVTAAHAISKALE----SHPELKIARFSDMFTGRMKTEI 463
+ AI+ C +L++L L N L + + ++L+ S +L A S + T++
Sbjct: 509 VPSAISGCSSLEFLDLHSNALSGSLPETLPRSLQLIDVSDNQLAGALSSSIGLMPELTKL 568
Query: 464 PPALSALGDGM---IAAGARLAVLDLSDNAF 547
+ L G+ I + +L +LDL DNAF
Sbjct: 569 YLGKNRLAGGIPPEIGSCQKLQLLDLGDNAF 599
>06_03_1222 -
28521799-28521900,28521952-28522029,28522292-28524335,
28525188-28525303
Length = 779
Score = 27.9 bits (59), Expect = 5.6
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 293 QIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFS-DMFTGRMKTEI 463
++ A+ C NL+YL+L N +SK + L+IA FS + FTG + I
Sbjct: 322 ELPSAVGNCTNLRYLSLRNNKF----VGDLSKVNFTRLNLRIADFSINNFTGTVPESI 375
>06_03_1056 + 27239176-27242361
Length = 1061
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +2
Query: 302 DAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSDMFTGRMKTEI 463
DA + PNLQYL L GN L + ++S A + ++ ++ F G++ EI
Sbjct: 255 DAGARTPNLQYLFLGGNLLAGPISASLSNATAL---VALSLANNSFAGQVPGEI 305
>07_03_0486 - 18634813-18635168,18635258-18638726
Length = 1274
Score = 27.5 bits (58), Expect = 7.4
Identities = 26/84 (30%), Positives = 37/84 (44%)
Frame = +2
Query: 293 QIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSDMFTGRMKTEIPPA 472
+I + I +C +LQ + GN + +I K E F + + IPP
Sbjct: 461 EIPETIGECSSLQMVDFFGNRFNGSLPASIGKLSE-------LAFLHLRQNELSGRIPPE 513
Query: 473 LSALGDGMIAAGARLAVLDLSDNA 544
L GD + LAVLDL+DNA
Sbjct: 514 L---GDCV-----NLAVLDLADNA 529
>05_06_0133 +
25905455-25905545,25905650-25906202,25906310-25906806,
25906905-25907043,25907182-25907253,25907344-25907415,
25907503-25907583,25907899-25908065,25908148-25908416,
25908512-25908638,25908752-25908820,25908928-25909120,
25909215-25909707
Length = 940
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 296 IVDAINKCPNLQYLALTGNTLGVTAAHAISKALE 397
I DA+++ P+L +L LTGN L + + K ++
Sbjct: 462 IPDALSQLPSLTFLDLTGNQLSGSIPSGLLKRIQ 495
>04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203
Length = 357
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = -2
Query: 513 RAPAAIMPSPKALKAGGISVFILPVNMSENLAILSSGCDSKALEIAW 373
R P+A P P++L+ ++F L + ++ A+L G S++L +W
Sbjct: 6 RRPSAARPRPRSLQRAAAALF-LAIFVALPFAVLYRGPVSRSLHDSW 51
>11_06_0709 - 26487235-26487423,26488003-26488081,26488164-26488375
Length = 159
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 543 ALSLRSSTAKRAPAAIMPSPKALKAGGISVFILPVNMSENLA 418
A+ L + +RAPA++ A GG V +LP + +A
Sbjct: 2 AMRLLKNIGRRAPASMACVSSAFSPGGCGVQVLPATTAAGVA 43
>07_01_0375 - 2790287-2790675,2790843-2793783
Length = 1109
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 494 MIAAGARLAVLDLSDN 541
M+ AG+ L+VLDLSDN
Sbjct: 406 MLGAGSNLSVLDLSDN 421
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,758,501
Number of Sequences: 37544
Number of extensions: 239895
Number of successful extensions: 741
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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