Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6l04
         (547 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061219-1|AAL28767.1|  596|Drosophila melanogaster LD16356p pro...   100   3e-21
AE014134-3098|AAF53801.1|  596|Drosophila melanogaster CG9999-PA...   100   3e-21
AF143860-1|AAD31518.1|  596|Drosophila melanogaster RanGAP protein.    98   8e-21
AE013599-481|AAF59205.2| 1399|Drosophila melanogaster CG1399-PB,...    31   1.3  
AY058675-1|AAL13904.1|  772|Drosophila melanogaster LD38495p pro...    30   2.3  
AE014297-2112|AAF55252.2|  772|Drosophila melanogaster CG4221-PA...    30   2.3  

>AY061219-1|AAL28767.1|  596|Drosophila melanogaster LD16356p
           protein.
          Length = 596

 Score = 99.5 bits (237), Expect = 3e-21
 Identities = 49/85 (57%), Positives = 61/85 (71%)
 Frame = +2

Query: 290 QQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSDMFTGRMKTEIPP 469
           Q +VDA+NK   + YL L GNTLGV AA AI + L+ HPE + A + +MFTGR+ +EIP 
Sbjct: 35  QDVVDALNKQTTVHYLNLDGNTLGVEAAKAIGEGLKRHPEFRKALWKNMFTGRLISEIPE 94

Query: 470 ALSALGDGMIAAGARLAVLDLSDNA 544
           AL  LG  +I AGA+L VLDLSDNA
Sbjct: 95  ALKHLGAALIVAGAKLTVLDLSDNA 119



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 24/88 (27%), Positives = 38/88 (43%)
 Frame = +2

Query: 278 IVSAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSDMFTGRMKT 457
           I   + + ++    P+L+ L +  NTL    A  I++AL   P L+   F D     +KT
Sbjct: 218 IEGVEALAESFKHNPHLRVLNMNDNTLKSEGAEKIAEALPFLPLLREMSFGDCL---IKT 274

Query: 458 EIPPALSALGDGMIAAGARLAVLDLSDN 541
                    G+ +     RL V+DL  N
Sbjct: 275 N---GAYHFGEALERGNERLEVIDLGFN 299


>AE014134-3098|AAF53801.1|  596|Drosophila melanogaster CG9999-PA
           protein.
          Length = 596

 Score = 99.5 bits (237), Expect = 3e-21
 Identities = 49/85 (57%), Positives = 61/85 (71%)
 Frame = +2

Query: 290 QQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSDMFTGRMKTEIPP 469
           Q +VDA+NK   + YL L GNTLGV AA AI + L+ HPE + A + +MFTGR+ +EIP 
Sbjct: 35  QDVVDALNKQTTVHYLNLDGNTLGVEAAKAIGEGLKRHPEFRKALWKNMFTGRLISEIPE 94

Query: 470 ALSALGDGMIAAGARLAVLDLSDNA 544
           AL  LG  +I AGA+L VLDLSDNA
Sbjct: 95  ALKHLGAALIVAGAKLTVLDLSDNA 119



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 24/88 (27%), Positives = 38/88 (43%)
 Frame = +2

Query: 278 IVSAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSDMFTGRMKT 457
           I   + + ++    P+L+ L +  NTL    A  I++AL   P L+   F D     +KT
Sbjct: 218 IEGVEALAESFKHNPHLRVLNMNDNTLKSEGAEKIAEALPFLPLLREMSFGDCL---IKT 274

Query: 458 EIPPALSALGDGMIAAGARLAVLDLSDN 541
                    G+ +     RL V+DL  N
Sbjct: 275 N---GAYHFGEALERGNERLEVIDLGFN 299


>AF143860-1|AAD31518.1|  596|Drosophila melanogaster RanGAP protein.
          Length = 596

 Score = 97.9 bits (233), Expect = 8e-21
 Identities = 48/85 (56%), Positives = 61/85 (71%)
 Frame = +2

Query: 290 QQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSDMFTGRMKTEIPP 469
           Q +VDA+NK   + YL L GNTLGV AA AI + L+ HPE + A + +MFTGR+ +EIP 
Sbjct: 35  QDVVDALNKQTTVHYLNLDGNTLGVEAAKAIGEGLKRHPEFRKALWKNMFTGRLISEIPE 94

Query: 470 ALSALGDGMIAAGARLAVLDLSDNA 544
           AL  LG  +I AGA+L VLDLS+NA
Sbjct: 95  ALKHLGAALIVAGAKLTVLDLSENA 119



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 24/88 (27%), Positives = 38/88 (43%)
 Frame = +2

Query: 278 IVSAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSDMFTGRMKT 457
           I   + + ++    P+L+ L +  NTL    A  I++AL   P L+   F D     +KT
Sbjct: 218 IEGVEALAESFKHNPHLRVLNMNDNTLKSEGAEKIAEALPFLPLLREMSFGDCL---IKT 274

Query: 458 EIPPALSALGDGMIAAGARLAVLDLSDN 541
                    G+ +     RL V+DL  N
Sbjct: 275 N---GAYHFGEALERGNERLEVIDLGFN 299


>AE013599-481|AAF59205.2| 1399|Drosophila melanogaster CG1399-PB,
           isoform B protein.
          Length = 1399

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +2

Query: 332 YLALTGNTLGVTAAHAISKALESHPELKIARFSDMFTGRMKTEIPPALSAL 484
           YL L+ NTLG   AH +   +     +++ +  D+    +  E+ P L+A+
Sbjct: 431 YLDLSSNTLGAQGAHVLESCIHG---VRVLQSLDISDNNLDAELAPVLTAI 478


>AY058675-1|AAL13904.1|  772|Drosophila melanogaster LD38495p
           protein.
          Length = 772

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +2

Query: 281 VSAQQIVDAINKCPNLQYLALTG 349
           ++ Q +V+A+ KC NLQ+L +TG
Sbjct: 513 ITNQALVEALTKCSNLQHLDVTG 535


>AE014297-2112|AAF55252.2|  772|Drosophila melanogaster CG4221-PA
           protein.
          Length = 772

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +2

Query: 281 VSAQQIVDAINKCPNLQYLALTG 349
           ++ Q +V+A+ KC NLQ+L +TG
Sbjct: 513 ITNQALVEALTKCSNLQHLDVTG 535


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,286,832
Number of Sequences: 53049
Number of extensions: 399287
Number of successful extensions: 965
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2069139900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)