Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6l04
(547 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with... 101 3e-22
L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with... 101 3e-22
Z81101-6|CAE53732.1| 840|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z81101-5|CAB03199.3| 705|Caenorhabditis elegans Hypothetical pr... 28 3.8
AB125702-1|BAD01496.1| 705|Caenorhabditis elegans D2-like dopam... 28 3.8
AB125701-1|BAD01495.1| 840|Caenorhabditis elegans D2-like dopam... 28 3.8
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p... 27 6.7
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z73424-6|CAI06058.1| 326|Caenorhabditis elegans Hypothetical pr... 27 6.7
L10986-4|AAA28017.3| 131|Caenorhabditis elegans Hypothetical pr... 27 6.7
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch... 27 6.7
>L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
b protein.
Length = 926
Score = 101 bits (243), Expect = 3e-22
Identities = 48/88 (54%), Positives = 63/88 (71%)
Frame = +2
Query: 284 SAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSDMFTGRMKTEI 463
SA+ +V I +++ L L GNTLG+ A + I+KALESHPEL+ +SD+FTGR+K EI
Sbjct: 427 SAEPVVKVIAAASSMKALELRGNTLGIAAGNVIAKALESHPELERCLWSDLFTGRLKNEI 486
Query: 464 PPALSALGDGMIAAGARLAVLDLSDNAF 547
PP L ALG M+ AG ++ LDLSDNAF
Sbjct: 487 PPILEALGKAMMTAGCKIKELDLSDNAF 514
Score = 88.6 bits (210), Expect = 3e-18
Identities = 44/85 (51%), Positives = 58/85 (68%)
Frame = +2
Query: 293 QIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSDMFTGRMKTEIPPA 472
+++D I K NL+ L GNTL V A I+++L++ ELK +SDMFTGR+K EIP
Sbjct: 24 KVIDQIRKHLNLEVLDFRGNTLSVLAGKLIAESLKTRRELKECIWSDMFTGRLKDEIPLV 83
Query: 473 LSALGDGMIAAGARLAVLDLSDNAF 547
L ALG+ + A+G RL LDLSDNAF
Sbjct: 84 LDALGEALTASGCRLTTLDLSDNAF 108
Score = 36.7 bits (81), Expect = 0.011
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +2
Query: 296 IVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSD 433
+V A+ NL+YL L NT+ A A++K LES P+L++ SD
Sbjct: 619 LVAALKHNRNLRYLWLEDNTVLPKGAKALAKTLESWPKLEVLNLSD 664
>L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
a protein.
Length = 960
Score = 101 bits (243), Expect = 3e-22
Identities = 48/88 (54%), Positives = 63/88 (71%)
Frame = +2
Query: 284 SAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSDMFTGRMKTEI 463
SA+ +V I +++ L L GNTLG+ A + I+KALESHPEL+ +SD+FTGR+K EI
Sbjct: 464 SAEPVVKVIAAASSMKALELRGNTLGIAAGNVIAKALESHPELERCLWSDLFTGRLKNEI 523
Query: 464 PPALSALGDGMIAAGARLAVLDLSDNAF 547
PP L ALG M+ AG ++ LDLSDNAF
Sbjct: 524 PPILEALGKAMMTAGCKIKELDLSDNAF 551
Score = 88.6 bits (210), Expect = 3e-18
Identities = 44/85 (51%), Positives = 58/85 (68%)
Frame = +2
Query: 293 QIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSDMFTGRMKTEIPPA 472
+++D I K NL+ L GNTL V A I+++L++ ELK +SDMFTGR+K EIP
Sbjct: 61 KVIDQIRKHLNLEVLDFRGNTLSVLAGKLIAESLKTRRELKECIWSDMFTGRLKDEIPLV 120
Query: 473 LSALGDGMIAAGARLAVLDLSDNAF 547
L ALG+ + A+G RL LDLSDNAF
Sbjct: 121 LDALGEALTASGCRLTTLDLSDNAF 145
Score = 36.7 bits (81), Expect = 0.011
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +2
Query: 296 IVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSD 433
+V A+ NL+YL L NT+ A A++K LES P+L++ SD
Sbjct: 656 LVAALKHNRNLRYLWLEDNTVLPKGAKALAKTLESWPKLEVLNLSD 701
>Z81101-6|CAE53732.1| 840|Caenorhabditis elegans Hypothetical
protein K09G1.4b protein.
Length = 840
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -2
Query: 537 SLRSSTAKRAPAAIMPSPKALKAGGISVFILP-VNMSENLAILSSGCDSKALEIA 376
SL ST + P+ I+ S L G+S+ ++P + + NL ++ S +AL+ A
Sbjct: 17 SLDLSTITQTPSTIVGSGIPLNYAGLSLIVIPLITLLGNLLVIISVLRYRALQSA 71
>Z81101-5|CAB03199.3| 705|Caenorhabditis elegans Hypothetical
protein K09G1.4a protein.
Length = 705
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -2
Query: 537 SLRSSTAKRAPAAIMPSPKALKAGGISVFILP-VNMSENLAILSSGCDSKALEIA 376
SL ST + P+ I+ S L G+S+ ++P + + NL ++ S +AL+ A
Sbjct: 17 SLDLSTITQTPSTIVGSGIPLNYAGLSLIVIPLITLLGNLLVIISVLRYRALQSA 71
>AB125702-1|BAD01496.1| 705|Caenorhabditis elegans D2-like dopamine
receptor shortvariant protein.
Length = 705
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -2
Query: 537 SLRSSTAKRAPAAIMPSPKALKAGGISVFILP-VNMSENLAILSSGCDSKALEIA 376
SL ST + P+ I+ S L G+S+ ++P + + NL ++ S +AL+ A
Sbjct: 17 SLDLSTITQTPSTIVGSGIPLNYAGLSLIVIPLITLLGNLLVIISVLRYRALQSA 71
>AB125701-1|BAD01495.1| 840|Caenorhabditis elegans D2-like dopamine
receptor longvariant protein.
Length = 840
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -2
Query: 537 SLRSSTAKRAPAAIMPSPKALKAGGISVFILP-VNMSENLAILSSGCDSKALEIA 376
SL ST + P+ I+ S L G+S+ ++P + + NL ++ S +AL+ A
Sbjct: 17 SLDLSTITQTPSTIVGSGIPLNYAGLSLIVIPLITLLGNLLVIISVLRYRALQSA 71
>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 434 MFTGRMKTEIPPALSALGD 490
MF G+ KTE+PP L A+ D
Sbjct: 137 MFMGKRKTEMPPHLFAVSD 155
>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 434 MFTGRMKTEIPPALSALGD 490
MF G+ KTE+PP L A+ D
Sbjct: 137 MFMGKRKTEMPPHLFAVSD 155
>Z73424-6|CAI06058.1| 326|Caenorhabditis elegans Hypothetical
protein C44B9.6 protein.
Length = 326
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 188 KIYFISKQIEQTRDRVKFCFVYFYFTFLGYVVDDFFT 78
+I F SK + + + +YFY T G + D FT
Sbjct: 29 RISFYSKTAKHAVESLNMKLIYFYITISGTIQFDIFT 65
>L10986-4|AAA28017.3| 131|Caenorhabditis elegans Hypothetical
protein F10E9.7 protein.
Length = 131
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 157 CSICLEIKYIFYINQIWT*NHSHSTKFDTE*MNVLPTSSLNCFSTTNCR 303
CS CLE I++IW N +TK + + + +L SS+ C T R
Sbjct: 76 CSHCLEKILNLKISKIWHWNSPTTTK-ELKILEMLEASSIQCEKYTPTR 123
>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
protein.
Length = 1966
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 434 MFTGRMKTEIPPALSALGD 490
MF G+ KTE+PP L A+ D
Sbjct: 140 MFMGKRKTEMPPHLFAVSD 158
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,067,542
Number of Sequences: 27780
Number of extensions: 209426
Number of successful extensions: 510
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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