Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6l04
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   6.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 417  ILSSGCDSKALEIAWAAVTPSVLPVNARYWRFGHLLI 307
            I SSG DS +   +W A T S      R  ++G L++
Sbjct: 1066 ITSSGSDSGSSNGSWTAGTVSQQKQKRRMVKYGKLVM 1102


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 413  KIARFSDMFTGRMKTEIPPALSALG 487
            KIA F D FT   K ++     A+G
Sbjct: 1278 KIASFDDKFTATYKEDVKLPCLAVG 1302


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 389 PWRSHGRPSHPVYC 348
           PWR+ G P +  YC
Sbjct: 135 PWRTCGNPWNTRYC 148


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 389 PWRSHGRPSHPVYC 348
           PWR+ G P +  YC
Sbjct: 188 PWRTCGNPWNTRYC 201


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 139 LTRSRVCSICLEIKYIFYINQIWT 210
           L+ S V  + ++    FY  Q WT
Sbjct: 45  LSISSVSEVLMDFTLDFYFRQFWT 68


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 363 TPSVLPVNARYWRFGHLLIASTIC 292
           T  V+P+  +Y  F  +L++ +IC
Sbjct: 300 TSLVVPLLGKYLIFAMILVSISIC 323


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 363 TPSVLPVNARYWRFGHLLIASTIC 292
           T  V+P+  +Y  F  +L++ +IC
Sbjct: 300 TSLVVPLLGKYLIFAMILVSISIC 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,621
Number of Sequences: 438
Number of extensions: 2316
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)