Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6l01
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   6.4  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    25   8.5  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    25   8.5  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    25   8.5  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    25   8.5  

>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 194 C*WIKNRK*VCY-HFQLKVNFFFWLNLLIRCIFFS 93
           C + KN+  +C  +FQ  +  F W++++ R + FS
Sbjct: 370 CPYGKNKTLICLLNFQSSLLSFEWISIISRALLFS 404


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 516 KNTNHIFIHIIPQ--GTPYILIPFIVIIGN 599
           K TN IF  +I    GT  ILI  + I+GN
Sbjct: 329 KVTNIIFFRVIGAIYGTALILITIVCIVGN 358


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 516 KNTNHIFIHIIPQ--GTPYILIPFIVIIGN 599
           K TN IF  +I    GT  ILI  + I+GN
Sbjct: 329 KVTNIIFFRVIGAIYGTALILITIVCIVGN 358


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 516 KNTNHIFIHIIPQ--GTPYILIPFIVIIGN 599
           K TN IF  +I    GT  ILI  + I+GN
Sbjct: 329 KVTNIIFFRVIGAIYGTALILITIVCIVGN 358


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 516 KNTNHIFIHIIPQ--GTPYILIPFIVIIGN 599
           K TN IF  +I    GT  ILI  + I+GN
Sbjct: 329 KVTNIIFFRVIGAIYGTALILITIVCIVGN 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,585,954
Number of Sequences: 5004
Number of extensions: 24745
Number of successful extensions: 53
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)