Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6k22
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    29   0.40 
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    27   1.6  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    26   3.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   5.0  
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        25   6.6  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    25   6.6  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    25   8.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   8.7  

>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 73 HTRRHKQHHRSDHETRYGR 17
          H+RRH+ HH    E+++GR
Sbjct: 24 HSRRHRHHHSRHRESKHGR 42


>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 462 DKYRVVYSDHQRLELEKEFHYSRYITIR 545
           DK R  + + QRL+ EKEF  SR   ++
Sbjct: 298 DKQRKEFENRQRLQKEKEFQKSREAALK 325


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 570 LGLSERQVKIWFQNR 614
           L + ER V IWFQNR
Sbjct: 203 LNIPERSVTIWFQNR 217


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -1

Query: 339  LLDSPNPPWPATAYRLSLVLLVPFSENDADPES-IPP*PVRRSMRTTVALPSSDA 178
            +L SP    P   +  S  L  P S + A P + +PP P   S    V LPS+DA
Sbjct: 978  ILSSPTSE-PPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADA 1031


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 8/37 (21%), Positives = 21/37 (56%)
 Frame = -2

Query: 545 ANSDVTTVVKFLLELQPLMITVHHAVFVFSARFTWIW 435
           AN    ++ KF +  +  ++   +  F+F++ F+++W
Sbjct: 300 ANDTRKSITKFSVPPERKLLWARNGFFIFASAFSFVW 336


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 348 ENLLLDSPNPPWPATAYRLSL 286
           E+ L   PNPP+PAT+  +S+
Sbjct: 130 EHRLYGIPNPPFPATSLYVSI 150


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 395 AIRVDEKTKLSDPTKSR*NAH*RQIPRGVQ*SSAAGARE 511
           +I + E+TK   P+K +     +++  GVQ  S A ++E
Sbjct: 572 SISLSEETKQEKPSKLKETVESKRLSTGVQKQSPAASKE 610


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 414 FSSTRMATAAGPVV--VKAEILSLENLLLDSPNPPWPA 307
           FS + ++++  P++  V   +   + LLL SP PP PA
Sbjct: 701 FSGSEISSSPSPLLPDVSDTVEEQQKLLLKSPPPPPPA 738


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,289,104
Number of Sequences: 5004
Number of extensions: 42522
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)