Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6k20
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    40   4e-04
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    38   0.001
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    36   0.005
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           35   0.014
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    34   0.019
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    32   0.076
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    31   0.23 
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    30   0.31 
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    30   0.31 
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    29   0.54 
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    29   0.71 
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    27   3.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   5.0  
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    25   8.7  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +1

Query: 16  DDGWWSGDLNGSYGIFPSSYVEEI 87
           D  WW G+ +G  G+FPS+YVEEI
Sbjct: 834 DPNWWEGECHGHRGLFPSNYVEEI 857



 Score = 36.7 bits (81), Expect = 0.004
 Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +1

Query: 1   IHEKQDDGWWSGDLN-GSYGIFPSSYVE 81
           I E  DDGWW G+ + G  G+FPS+YVE
Sbjct: 754 ILEFVDDGWWLGENSKGQQGLFPSNYVE 781


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +1

Query: 7   EKQDDGWWSGDLNGSYGIFPSSYV 78
           E  ++ WW G+LNG  GIFPS+YV
Sbjct: 171 EHVNNDWWRGELNGKEGIFPSNYV 194


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +1

Query: 7   EKQDDGWWSG-DLNGSYGIFPSSYVEEIN 90
           E+  DGWW G D  G+ GIFP+S+VE I+
Sbjct: 36  EEFGDGWWEGEDEQGNRGIFPASHVELIS 64


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
 Frame = +1

Query: 10  KQDDGWWSG----DLNGSYGIFPSSYVEEI 87
           +Q DGWW G       G  G+FPS+Y+EE+
Sbjct: 384 RQKDGWWKGLVVSPTVGRIGLFPSNYIEEL 413


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 34.3 bits (75), Expect = 0.019
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 4/29 (13%)
 Frame = +1

Query: 13  QDDGWWSGDL----NGSYGIFPSSYVEEI 87
           Q+DGWW G++    N   G+FPS++V+ +
Sbjct: 899 QEDGWWDGEIINVPNSKRGLFPSNFVQTV 927


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 32.3 bits (70), Expect = 0.076
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 25  WWSGDLNGSYGIFPSSYVE 81
           WW G LNG+ G FP +YV+
Sbjct: 446 WWIGRLNGAQGQFPGNYVQ 464


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 1    IHEKQDDGWWSGDLNGSYGIFPSSYVEE 84
            I +K+  GWW    NG+ G  P++YV E
Sbjct: 1135 IVQKEPSGWWLALKNGAEGWVPATYVTE 1162


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 25  WWSGDLNGSYGIFPSSYVEEI 87
           WW G    + GIFP +YV+ +
Sbjct: 252 WWKGSCKNAVGIFPVNYVQRV 272


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 19  DGWWSGDLNGSYGIFPSSYVE 81
           D WW+G +    GIFP++YV+
Sbjct: 408 DDWWTGRIGYREGIFPANYVK 428


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 19  DGWWSGDLNGSYGIFPSSYVEEI 87
           +GW  G LNG  G FP++YV ++
Sbjct: 620 NGWSEGILNGVTGQFPANYVTDV 642


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
 Frame = +1

Query: 16  DDGWWSGDLNG----SYGIFPSSYVEEI 87
           +DGWW G + G    + G FPS++V EI
Sbjct: 641 EDGWWEGFVVGEDDHNRGQFPSNFVREI 668


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 7/27 (25%)
 Frame = +1

Query: 16  DDGWWSGD-------LNGSYGIFPSSY 75
           D+GWW G+         G+ G+FPS+Y
Sbjct: 455 DEGWWVGEKLGEDGVFTGNTGMFPSNY 481


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 6/27 (22%), Positives = 16/27 (59%)
 Frame = +1

Query: 1   IHEKQDDGWWSGDLNGSYGIFPSSYVE 81
           +++     WW   ++G  G+ PS++++
Sbjct: 538 VNDTASSDWWKCSVDGKEGVVPSNFIK 564


>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 564 LNLCSKSFIFLSDKNVIIMYVLEQICM*FSRIQLFGISIFAF*MLFTFKNL 716
           +N  S+  + L   ++I+++    +   +S IQL GI+ +    LFT + L
Sbjct: 6   VNFFSQKLLRLLIPSIIVVFAFAALFAIYSPIQLGGINFYKRTNLFTVEEL 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,884,224
Number of Sequences: 5004
Number of extensions: 57726
Number of successful extensions: 126
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)