Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6k20
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0481 + 8789890-8789949,8790325-8790441,8790532-8790601,879...    31   1.3  
10_08_0613 - 19232706-19232822,19232936-19233010,19233132-192332...    28   9.1  

>03_02_0481 +
           8789890-8789949,8790325-8790441,8790532-8790601,
           8790688-8790836,8791520-8791621,8791692-8791892,
           8792589-8792651,8792791-8793009,8793681-8793755,
           8794003-8794101,8794521-8794691
          Length = 441

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 1   IHEKQDDGWWSGDLNGSYGIFPSSYVEE 84
           + +   +GW  G+  G  G FPS+YVE+
Sbjct: 350 VRQVAPNGWSEGECKGKAGWFPSAYVEQ 377


>10_08_0613 -
           19232706-19232822,19232936-19233010,19233132-19233287,
           19233412-19233549,19233571-19233771,19233985-19234086,
           19234960-19235111,19235213-19235282,19235416-19235532,
           19235674-19235733
          Length = 395

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 1   IHEKQDDGWWSGDLNGSYGIFPSSYVEE 84
           + +  ++GW  G+  G  G FP  Y+E+
Sbjct: 355 VRKVSNNGWAEGECRGKAGWFPYDYIEK 382


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,706,112
Number of Sequences: 37544
Number of extensions: 268646
Number of successful extensions: 366
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)