Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6k20
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   2.3  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   2.3  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   4.0  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    22   5.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   7.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   7.1  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   9.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.3  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 739 NN*YNQQNKFLNVNNIQKANILIP 668
           NN YN +  + N+ NI++  + +P
Sbjct: 315 NNNYNSKKLYYNIINIEQIPVPVP 338


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 739 NN*YNQQNKFLNVNNIQKANILIP 668
           NN YN +  + N+ NI++  + +P
Sbjct: 326 NNNYNSKKLYYNIINIEQIPVPVP 349


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 742 SNN*YNQQNK-FLNVNNIQKANILIP 668
           +NN YN   K + N+N I++  + IP
Sbjct: 97  NNNNYNNYKKLYYNINYIEQVPVPIP 122


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 742 SNN*YNQQNK-FLNVNNIQKANILIP 668
           +NN YN   K + N+N I++  I +P
Sbjct: 99  NNNNYNNYKKLYYNINYIEQIPIPVP 124


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 568 IYVVSRLFF*VIKT**SCTFWNKYV 642
           I V+SR+FF ++    +  +W+ Y+
Sbjct: 415 IDVISRIFFPIVFAFFNLAYWSTYL 439


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 568 IYVVSRLFF*VIKT**SCTFWNKYV 642
           I V+SR+FF ++    +  +W+ Y+
Sbjct: 415 IDVISRIFFPIVFAFFNLAYWSTYL 439


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -3

Query: 736 N*YNQQNKFLNVNNIQKANILIP 668
           N YN +  + N+N I++  + +P
Sbjct: 319 NNYNNKKLYYNINYIEQIPVPVP 341


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -3

Query: 481 KNFFQFIRKELV 446
           KN F+FIRK+++
Sbjct: 329 KNLFEFIRKQVL 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,209
Number of Sequences: 438
Number of extensions: 4047
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)