Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6k14
(441 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 37 0.006
02_04_0382 - 22501041-22501279,22501717-22501810 35 0.025
03_06_0471 + 34169562-34169892,34170121-34170347 33 0.13
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 30 0.95
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 1.3
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 29 1.3
01_01_0082 + 625198-625719 29 2.2
08_02_1289 - 25923916-25924586,25925148-25926630 27 5.1
04_03_0904 + 20717005-20718087 27 5.1
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676... 27 5.1
10_01_0239 + 2502980-2503462 27 6.7
09_02_0417 - 8915604-8916779,8916863-8917270 27 6.7
10_08_0493 + 18299885-18299892,18300201-18300837,18301254-183016... 27 8.8
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406... 27 8.8
06_02_0342 + 14789190-14789205,14789868-14789891,14789968-147901... 27 8.8
05_04_0175 - 18742156-18743592 27 8.8
01_05_0504 + 22781737-22781799,22782033-22782287,22783652-22784077 27 8.8
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 37.1 bits (82), Expect = 0.006
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +1
Query: 136 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDPPQGRPYFKPTPFPG 306
QP Y P + P V PP Y P +G P N + Y +PP GRP P P G
Sbjct: 387 QPEEAMSYAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYG 445
Query: 307 ARG 315
A G
Sbjct: 446 AGG 448
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 35.1 bits (77), Expect = 0.025
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Frame = +1
Query: 52 KFFMIFVLALLA--MANAQVVINDPDPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNG 225
K ++F L L A +A+A+ +D D P +E P +PP P+ +
Sbjct: 11 KALLVFALLLAAAFVASAEQTHDDGD----NPPESPDHEDPPPSPEYYDPP----PSPDY 62
Query: 226 YEPIDNGAYYVDPPQGRPYFKPTPFPGARGG 318
Y+P + YY DPP Y+ P P P GG
Sbjct: 63 YDPPHSPDYY-DPPPSPDYYDPPPSPYYGGG 92
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 32.7 bits (71), Expect = 0.13
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +1
Query: 157 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 306
Y P P PP Y P+ GY P GAY PP G +P + P +PG
Sbjct: 56 YPPAGGYPGAQYPPSGYPPSQGGYPP---GAY---PPSGYPQQPGYPPAGYPG 102
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 29.9 bits (64), Expect = 0.95
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +1
Query: 175 RPYIVNP---PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 291
+PY P P P G Y P G Y PP+G+P + P
Sbjct: 266 QPYPPKPQGQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPP 307
Score = 29.1 bits (62), Expect = 1.7
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Frame = +1
Query: 118 PDPFFAQPTVGNGYEPI-DNRPYIVNPPKDY---NPNGNGYEPIDNGAYYVDPPQGRPYF 285
P P+ QP G Y P Y P ++ P Y P G Y PQG+PY
Sbjct: 229 PQPYPPQPQ-GQTYPPQPQGETYQPQPQRETYPPQPQVQPYPPKPQGQPYPPQPQGQPY- 286
Query: 286 KPTPF 300
P P+
Sbjct: 287 PPQPY 291
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +1
Query: 163 PIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 303
P + P IV P Y P+ YEP Y +PP PY P FP
Sbjct: 636 PYPSPPDIVPSPPSYEPSPPSYEP-SPPEYAPEPPVYAPY-PPGIFP 680
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/56 (30%), Positives = 22/56 (39%)
Frame = +1
Query: 139 PTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPG 306
P++ NG P+ + PP P+ NGA PP G P P PG
Sbjct: 638 PSMANGAGPVPPPIAVAPPPAPPIAGAAPPPPMANGAAAAAPPGGNPAPPAGPQPG 693
>01_01_0082 + 625198-625719
Length = 173
Score = 28.7 bits (61), Expect = 2.2
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +1
Query: 139 PTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPF-PGARG 315
P G GY P + NP YNP +G+ N Y+ PP G Y + F P A
Sbjct: 97 PYGGGGYNPTPS----YNPTPGYNPTPSGWFTPPNMPSYLTPP-GTLYPQDPGFRPNAAA 151
Query: 316 G 318
G
Sbjct: 152 G 152
>08_02_1289 - 25923916-25924586,25925148-25926630
Length = 717
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -1
Query: 429 ALQYVYLFIPLT*I---HMKF*NILLIHYFVINFLRYSLLPTASTRERGRLEV 280
ALQY+Y +P+ + H+K NILL F YSL+P + +L V
Sbjct: 519 ALQYLYDELPMLTVPHGHLKSSNILLNDRFEPLLTDYSLVPVMNQSHSAQLMV 571
>04_03_0904 + 20717005-20718087
Length = 360
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +1
Query: 190 NPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 303
NPP Y P Y+P PP +P KPTP P
Sbjct: 237 NPPPTYKPAPPTYKPQPKPN---PPPTYKPQPKPTPTP 271
>03_05_0937 -
28967038-28967245,28967348-28967556,28967584-28967644,
28967926-28968742,28968960-28971024
Length = 1119
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +3
Query: 243 RCILRGPSPR-PTLLQAYPFPWCSRW 317
+ I+ PSP P + A F WCS W
Sbjct: 755 KAIIHNPSPLIPPIFGADEFGWCSEW 780
>10_01_0239 + 2502980-2503462
Length = 160
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 180 RAVVNRFVAVSYSRLGKEWIGVIDHNLSVGHSQQSEDENHEEF 52
R N ++ GK + G+ID N +V + S ++ EEF
Sbjct: 42 RTTSNYSTSLGNGSFGKVYNGIIDDNTAVAVKRYSRIDSEEEF 84
>09_02_0417 - 8915604-8916779,8916863-8917270
Length = 527
Score = 27.1 bits (57), Expect = 6.7
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +1
Query: 178 PYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 297
PY +N P P+ Y P Y PPQ PY P P
Sbjct: 42 PYAMNFPFPPFPH---YPPYTQNLQYAVPPQYAPYTLPPP 78
>10_08_0493 +
18299885-18299892,18300201-18300837,18301254-18301676,
18301769-18302014,18302124-18302789,18303228-18303283,
18303367-18303460,18303559-18303738
Length = 769
Score = 26.6 bits (56), Expect = 8.8
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +1
Query: 112 NDPDPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDN--GAYYVDPPQGRPYF 285
N+P PF P G + + NR +++ +P G P D G +DPP GRP
Sbjct: 469 NNPTPF--APFDGPPVDILPNREFMLYGRSANSPPYGG-PPNDPPYGRPAIDPPYGRPAI 525
Query: 286 KP 291
P
Sbjct: 526 DP 527
>08_01_0461 -
4063614-4064375,4064439-4066017,4066041-4066086,
4066416-4066933,4067435-4067694,4068089-4068594,
4068667-4071319
Length = 2107
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 216 WKRLRTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 335
W RLR R +L+ P+P P + + RW K +L
Sbjct: 836 WDRLRENSFRILLQFPTPLPGISSSTSIDSVIRWAKKLVL 875
>06_02_0342 +
14789190-14789205,14789868-14789891,14789968-14790128,
14790218-14790335,14790658-14790735,14790819-14790938,
14791380-14791430,14791576-14791883
Length = 291
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 39 SYKNEILHDFRPRSAGYGQRSSCD 110
SY E++ FRP +A YG SS D
Sbjct: 191 SYCPELMSGFRPYTASYGDISSFD 214
>05_04_0175 - 18742156-18743592
Length = 478
Score = 26.6 bits (56), Expect = 8.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 123 IGVIDHNLSVGHSQQSEDENHEE 55
+G ++H++ V H Q +E+E EE
Sbjct: 69 VGQLEHDVVVRHGQAAEEEEEEE 91
>01_05_0504 + 22781737-22781799,22782033-22782287,22783652-22784077
Length = 247
Score = 26.6 bits (56), Expect = 8.8
Identities = 16/73 (21%), Positives = 34/73 (46%)
Frame = -1
Query: 354 YFVINFLRYSLLPTASTRERGRLEVRSALGRVHVICTVVDRFVAVSIRVVIFGRINDVRA 175
YF I F+ + + PT + + + + L V+C+ ++ V +R +I+G +
Sbjct: 80 YFFIYFIGHGVFPTVHSLMKSKKDFPKVLLISSVLCS-LNYAVTTLLRYLIYGEDVQAQV 138
Query: 174 VVNRFVAVSYSRL 136
+N Y+R+
Sbjct: 139 TLNLPSGKLYTRI 151
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,133,757
Number of Sequences: 37544
Number of extensions: 296810
Number of successful extensions: 760
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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