Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6k10
(636 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97191-4|AAY55832.1| 127|Caenorhabditis elegans Hypothetical pr... 60 2e-09
Z68749-6|CAC35818.1| 689|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z68749-5|CAC35817.1| 712|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z68219-7|CAC35827.1| 689|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z68219-6|CAC35826.1| 712|Caenorhabditis elegans Hypothetical pr... 28 6.4
AF070477-1|AAC24035.1| 589|Caenorhabditis elegans fibulin-1D pr... 28 6.4
AF051403-2|AAC28323.1| 712|Caenorhabditis elegans fibulin-1 iso... 28 6.4
AF051403-1|AAC28324.1| 689|Caenorhabditis elegans fibulin-1 iso... 28 6.4
AF051402-1|AAC28322.1| 712|Caenorhabditis elegans fibulin-1 iso... 28 6.4
AF051401-1|AAC28321.1| 689|Caenorhabditis elegans fibulin-1 iso... 28 6.4
AB212860-1|BAD98165.1| 712|Caenorhabditis elegans fibulin-1C pr... 28 6.4
AF003390-2|AAP31432.1| 341|Caenorhabditis elegans Hypothetical ... 27 8.5
AF003390-1|AAB54271.2| 473|Caenorhabditis elegans Hypothetical ... 27 8.5
>U97191-4|AAY55832.1| 127|Caenorhabditis elegans Hypothetical
protein F53F10.8 protein.
Length = 127
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/80 (31%), Positives = 52/80 (65%)
Frame = +3
Query: 123 LMITGVLWGCTNPFIRQGTRGLRDIKSDTLVGQVRAEIWFLLSNWKYVVPWLVNQAGSLV 302
+++ G +WG TNP +R ++ L + K+ ++G +++ FL NW++ +P+ +NQ+GS++
Sbjct: 12 IIVVGFVWGATNPLLRAASKDLENKKNGIILGFLKS---FL--NWRFSIPFALNQSGSVM 66
Query: 303 YLAAVQRAPLSVAVPVASGV 362
+ A V P++V VP + +
Sbjct: 67 FNALVVNFPVTVVVPCVNAI 86
>Z68749-6|CAC35818.1| 689|Caenorhabditis elegans Hypothetical
protein F56H11.1b protein.
Length = 689
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 73 ISDKSTYDSKCCRNSGCL*SPGSFGAARTLS 165
I + +T C + CL +PGSF RTLS
Sbjct: 196 IDECATLMDDCLESQRCLNTPGSFKCIRTLS 226
>Z68749-5|CAC35817.1| 712|Caenorhabditis elegans Hypothetical
protein F56H11.1a protein.
Length = 712
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 73 ISDKSTYDSKCCRNSGCL*SPGSFGAARTLS 165
I + +T C + CL +PGSF RTLS
Sbjct: 196 IDECATLMDDCLESQRCLNTPGSFKCIRTLS 226
>Z68219-7|CAC35827.1| 689|Caenorhabditis elegans Hypothetical
protein F56H11.1b protein.
Length = 689
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 73 ISDKSTYDSKCCRNSGCL*SPGSFGAARTLS 165
I + +T C + CL +PGSF RTLS
Sbjct: 196 IDECATLMDDCLESQRCLNTPGSFKCIRTLS 226
>Z68219-6|CAC35826.1| 712|Caenorhabditis elegans Hypothetical
protein F56H11.1a protein.
Length = 712
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 73 ISDKSTYDSKCCRNSGCL*SPGSFGAARTLS 165
I + +T C + CL +PGSF RTLS
Sbjct: 196 IDECATLMDDCLESQRCLNTPGSFKCIRTLS 226
>AF070477-1|AAC24035.1| 589|Caenorhabditis elegans fibulin-1D
precursor protein.
Length = 589
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 73 ISDKSTYDSKCCRNSGCL*SPGSFGAARTLS 165
I + +T C + CL +PGSF RTLS
Sbjct: 96 IDECATLMDDCLESQRCLNTPGSFKCIRTLS 126
>AF051403-2|AAC28323.1| 712|Caenorhabditis elegans fibulin-1
isoform C precursor protein.
Length = 712
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 73 ISDKSTYDSKCCRNSGCL*SPGSFGAARTLS 165
I + +T C + CL +PGSF RTLS
Sbjct: 196 IDECATLMDDCLESQRCLNTPGSFKCIRTLS 226
>AF051403-1|AAC28324.1| 689|Caenorhabditis elegans fibulin-1
isoform D precursor protein.
Length = 689
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 73 ISDKSTYDSKCCRNSGCL*SPGSFGAARTLS 165
I + +T C + CL +PGSF RTLS
Sbjct: 196 IDECATLMDDCLESQRCLNTPGSFKCIRTLS 226
>AF051402-1|AAC28322.1| 712|Caenorhabditis elegans fibulin-1
isoform C precursor protein.
Length = 712
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 73 ISDKSTYDSKCCRNSGCL*SPGSFGAARTLS 165
I + +T C + CL +PGSF RTLS
Sbjct: 196 IDECATLMDDCLESQRCLNTPGSFKCIRTLS 226
>AF051401-1|AAC28321.1| 689|Caenorhabditis elegans fibulin-1
isoform D precursor protein.
Length = 689
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 73 ISDKSTYDSKCCRNSGCL*SPGSFGAARTLS 165
I + +T C + CL +PGSF RTLS
Sbjct: 196 IDECATLMDDCLESQRCLNTPGSFKCIRTLS 226
>AB212860-1|BAD98165.1| 712|Caenorhabditis elegans fibulin-1C
protein.
Length = 712
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 73 ISDKSTYDSKCCRNSGCL*SPGSFGAARTLS 165
I + +T C + CL +PGSF RTLS
Sbjct: 196 IDECATLMDDCLESQRCLNTPGSFKCIRTLS 226
>AF003390-2|AAP31432.1| 341|Caenorhabditis elegans Hypothetical
protein R155.1b protein.
Length = 341
Score = 27.5 bits (58), Expect = 8.5
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +3
Query: 234 IWFLLSNWKYVVPWLVNQAGSLV 302
+WF L+ +KY WL+ + S++
Sbjct: 120 LWFRLTMYKYCAMWLITEGASIL 142
>AF003390-1|AAB54271.2| 473|Caenorhabditis elegans Hypothetical
protein R155.1a protein.
Length = 473
Score = 27.5 bits (58), Expect = 8.5
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +3
Query: 234 IWFLLSNWKYVVPWLVNQAGSLV 302
+WF L+ +KY WL+ + S++
Sbjct: 252 LWFRLTMYKYCAMWLITEGASIL 274
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,928,449
Number of Sequences: 27780
Number of extensions: 200150
Number of successful extensions: 533
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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