Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6k04
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    35   0.012
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    31   0.19 
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    27   2.3  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    27   2.3  
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    27   2.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   3.1  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    26   4.0  
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    26   5.3  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    25   7.1  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    25   7.1  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    25   9.3  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
 Frame = +3

Query: 306 VIKKILETGGGMPL-HDGCTVSIAFSGYWENELQPFDVMSLNNPMTVDLKDSGLLPGLDI 482
           V K+++ +G G      G  +++ ++G   N  +    +   +P    +    L+ G D 
Sbjct: 3   VEKQVISSGNGQDFPKPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWDE 62

Query: 483 AVRSMLVGEISLFLFSYKVMYGEMGIPPRIKPKSDCVFYIKLV 611
            V  M +GE +    +    YG  G P  I P S  +F ++L+
Sbjct: 63  GVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPNSTLLFDVELL 105


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 24/83 (28%), Positives = 36/83 (43%)
 Frame = +3

Query: 363 VSIAFSGYWENELQPFDVMSLNNPMTVDLKDSGLLPGLDIAVRSMLVGEISLFLFSYKVM 542
           VS+ + G   N  + FD      P T +L    ++ G D+ +  M VG          + 
Sbjct: 279 VSMRYIGRLTNG-KVFDKNITGKPFTFNLGLEEVIKGWDVGIVGMQVGGERTIHIPAAMA 337

Query: 543 YGEMGIPPRIKPKSDCVFYIKLV 611
           YG   + P I   SD VF +KL+
Sbjct: 338 YGSKRL-PGIPANSDLVFDVKLL 359


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -1

Query: 544 YITLYENKN-SDISPTSIDLTAISSPGSKPLSLRSTVIGLFKLITSNGCNSFSQYPENAI 368
           + TL   +N +D    S+D  A      + + +  T   L   +TS      S++ EN+I
Sbjct: 82  FATLDSKRNVNDTEVESMDSQAYKKELIEQIMIAQTECSLALDMTSL---LLSKFKENSI 138

Query: 367 ETVHPSCKGIPPP 329
           ET+ P  K   PP
Sbjct: 139 ETISPFLKSTVPP 151


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 117 NGLDLRECTTTGSILHINEIYEENDDNDTTESKVF 221
           +GLDL    TT      N IY+E+D N T +S  F
Sbjct: 264 DGLDLNTVFTTND-WEKNIIYDESDVNKTNQSSFF 297


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 583 DFGFILGGIPISPYITLYENKNSDISPTSIDLTAI 479
           DFG + G + +S  I  +E KNS++ P    +TA+
Sbjct: 176 DFGRVNGNLALSRAIGDFEFKNSNLEPEKQIVTAL 210


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 174 IYEENDD-NDTTESKVFKTIDILGEPVKNFEVLKNELIPVDENH 302
           IYE  DD  DT  S  F  +  L   +      KNE++P+  +H
Sbjct: 230 IYEIGDDLEDTFRSFSFLELHSLAIKLSKLVTCKNEVVPIMVSH 273


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = -1

Query: 532 YENKNSDISPTSIDLTAISSPGSKPLSLRSTVIGLFKLITSNGCNSF-SQYPENAIETVH 356
           YE +  D+   +  LT      +KP   R  +    K  T++  +SF S+  E A E   
Sbjct: 256 YERRRGDVKDRAEALTITKFKTAKPTYKRPGMGPGGKDATASSSSSFSSKREEAAAEPSS 315

Query: 355 PSCKGIPPP 329
            +   IPPP
Sbjct: 316 STATDIPPP 324


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = +3

Query: 261 EVLKNELIPVDENHYVIKKILETGGGMPLHDGCTVSIAFSGYWENEL 401
           E L N   P    H +++++ E    +P  D C V++     W++ +
Sbjct: 451 ENLDNLYDPDSHVHLILQELGEPCKSVPQEDNCLVTLPLYNRWDSSI 497


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 414 RQMVVTHFPSIQRMLLRLCIHHARAYLHQF 325
           R  +  +FPS+ ++     +H  R Y+ QF
Sbjct: 325 RGSIFQYFPSLSKLFRYYGLHSTRTYVEQF 354


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = -1

Query: 541 ITLYENKNSDISPT-SIDLTAISSPGSKPLSLRSTVIGLFKLITSNGCNSFSQYPENAIE 365
           +T  E KN        ID +   SP   P+S++  +  L    +S+  + F+++   + +
Sbjct: 192 VTPREPKNLQSQEVMDIDSSPFVSPS--PISMKMDMPSLNDRNSSHALSLFAEFEHESYD 249

Query: 364 TVHPSCKGIPPP 329
           +++PS  G+ PP
Sbjct: 250 SINPS--GMSPP 259


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -1

Query: 526 NKNSDISPTS--IDLTAISSPGSKPLS 452
           + NSD  P S  +D +   SPGSKP+S
Sbjct: 158 SSNSDNFPPSPKVDTSNTVSPGSKPIS 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,915
Number of Sequences: 5004
Number of extensions: 56407
Number of successful extensions: 157
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)