Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6k01
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    68   6e-14
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    68   6e-14
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.7  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   3.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   4.0  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   5.3  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   7.0  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 68.1 bits (159), Expect = 6e-14
 Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 4/185 (2%)
 Frame = +1

Query: 55  AGLGAGITEAVLVNPFEVVKVTLQSNKSLA---TEIPSTWSVTRQIVREHGLGSRGLNKG 225
           +G  AG T    V P +  +  L ++   A    E     +   +I +  G+   GL +G
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGI--TGLYRG 178

Query: 226 LTATIARNGVFNMVYFGFYHSVKGYVPEYQDPLSEFLRKVAIGFTSGVLGSCANIPFDVA 405
              ++    ++   YFGFY + +G +P+ +   + FL    I      +    + PFD  
Sbjct: 179 FGVSVQGIIIYRAAYFGFYDTARGMLPDPKK--TPFLISWGIAQVVTTVAGIVSYPFDTV 236

Query: 406 KSRIQGPQ-PVPGVVKYSSTSGAIIMVYREEGFRALYKGLLPKVLRLGPGGAIMLVVYDY 582
           + R+          + Y ST      +Y+ EG  A +KG    +LR G GGA++LV+YD 
Sbjct: 237 RRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR-GTGGALVLVLYDE 295

Query: 583 VYHFL 597
           + + L
Sbjct: 296 IKNLL 300


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 68.1 bits (159), Expect = 6e-14
 Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 4/185 (2%)
 Frame = +1

Query: 55  AGLGAGITEAVLVNPFEVVKVTLQSNKSLA---TEIPSTWSVTRQIVREHGLGSRGLNKG 225
           +G  AG T    V P +  +  L ++   A    E     +   +I +  G+   GL +G
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGI--TGLYRG 178

Query: 226 LTATIARNGVFNMVYFGFYHSVKGYVPEYQDPLSEFLRKVAIGFTSGVLGSCANIPFDVA 405
              ++    ++   YFGFY + +G +P+ +   + FL    I      +    + PFD  
Sbjct: 179 FGVSVQGIIIYRAAYFGFYDTARGMLPDPKK--TPFLISWGIAQVVTTVAGIVSYPFDTV 236

Query: 406 KSRIQGPQ-PVPGVVKYSSTSGAIIMVYREEGFRALYKGLLPKVLRLGPGGAIMLVVYDY 582
           + R+          + Y ST      +Y+ EG  A +KG    +LR G GGA++LV+YD 
Sbjct: 237 RRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR-GTGGALVLVLYDE 295

Query: 583 VYHFL 597
           + + L
Sbjct: 296 IKNLL 300


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 377 EPRTPDVNPMATFRRNSDNGS 315
           E R  D+N +   RR+SD+GS
Sbjct: 180 ENRLRDINDIGLNRRDSDDGS 200


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 135 LVRLKRNLDNFEWIH*DSFRDSGS*SCQRKRIFSIFNSLHNFK 7
           L RL+R++ N   +H    ++     C  KR++S  NSL N K
Sbjct: 15  LTRLRRHIQN---VHTRPSKEPICNIC--KRVYSSLNSLRNHK 52


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = -3

Query: 471 GAGRGTILDDARHRLRTLDPTLRDIEGNIRARAQDPRREPYGDL 340
           GAG G  +     +L+ L P ++ I  + +    DP  +   ++
Sbjct: 213 GAGTGGTISGIGRKLKELSPNIKIIAVDPKGSILDPSSDSQNEV 256


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 337 RKVAIGFTSGVLGSCA 384
           R++   FT+ V+GSCA
Sbjct: 175 RELTARFTTDVIGSCA 190


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 46  FSLAGLGAGITEAVLVNPFEVVKVTLQSNKSLATEIPSTW-SVTRQIVRE 192
           FSL GLG+G   +V        +    SN+ +  +    W  V  ++VR+
Sbjct: 1   FSLGGLGSGFANSVKELRNLAQQAFAHSNQLIIDKSLKGWKEVEYEVVRD 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,759
Number of Sequences: 438
Number of extensions: 4165
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)