Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6j22
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    27   2.7  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    26   3.6  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    26   4.7  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   6.2  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   8.3  

>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/68 (22%), Positives = 33/68 (48%)
 Frame = -3

Query: 289 CIN*IYYVLSIQ*YCYKNILHITQIYHFKTHYCSINKCNLSPKK*KTNLLTIFRLINSIM 110
           CI+ + + L  Q +C++N++H+ Q   ++  +  +   +L       +  T  RL N+  
Sbjct: 80  CIDVVAF-LQGQKFCFQNLVHVLQDIRYQLSFARLRNSDLVTALDILSTGTSLRLANAPT 138

Query: 109 HQLMFIQE 86
            +L  + E
Sbjct: 139 SKLYMLSE 146


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -2

Query: 302 KISDMYKLNLLRSIDTVILL*KYTSYNTNIPFQNSLLF 189
           K+SD Y +    +++ + LL +    +T++P Q + LF
Sbjct: 36  KVSDRYSIPFSLAVNFIFLLMRIYIKSTHVPVQRNQLF 73


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 329 IHSIKIILYIRNIKYLFTSVYCMRSNYL 412
           + +  I+ Y RN+KY+F +V+    N L
Sbjct: 136 LKNASILAYRRNLKYIFLTVFSANLNAL 163


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 175 NLSPKK*KTNLLTIFRLINSIMHQLMFIQEDKKIIEYV 62
           N+ P+K    L+ + R +  I+H + + + D  I EY+
Sbjct: 449 NIGPEK----LMIVVRSVYYILHDMKYKKSDSTIFEYI 482


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 510 IKYKECVHTLAYINYSGSLELQY 442
           IKY +C+H L  I    S E++Y
Sbjct: 398 IKYSKCLHILPLIEVGLSYEVRY 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,075,746
Number of Sequences: 5004
Number of extensions: 39695
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)