Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6j22
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81477-4|CAB03925.2|  279|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AC006804-2|AAL32253.2|  372|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z83239-3|CAB05810.1|  344|Caenorhabditis elegans Hypothetical pr...    27   7.5  

>Z81477-4|CAB03925.2|  279|Caenorhabditis elegans Hypothetical
           protein C27C7.5 protein.
          Length = 279

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = +2

Query: 251 LLYR*NVVNLVYTYR--ISF*FTFCNAPIHSIKIILYIRNIKYLFTSVYCM 397
           L++  ++VN+VYTY   +S+      +P  ++  +L+   +KY + S+YC+
Sbjct: 4   LIFLVSLVNMVYTYTMIVSWGRPTEMSPGSTVDQVLWDTCVKYCYNSMYCV 54


>AC006804-2|AAL32253.2|  372|Caenorhabditis elegans Hypothetical
           protein Y53G8B.3 protein.
          Length = 372

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 102 NWCIIELIKRKIVNRFVFYFLGL 170
           NWC ++LI  K+V  F+    GL
Sbjct: 99  NWCFVDLICAKVVGLFMLVLFGL 121


>Z83239-3|CAB05810.1|  344|Caenorhabditis elegans Hypothetical
           protein T09F5.3 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 359 RNIKYLFTSVYCMRSNYL 412
           RNI YL TS++ M S YL
Sbjct: 195 RNISYLITSIFMMGSQYL 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,060,853
Number of Sequences: 27780
Number of extensions: 209343
Number of successful extensions: 357
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)