Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6j18
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual 42 6e-05
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 29 0.47
SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1||... 29 0.62
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 28 1.1
SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces... 27 1.9
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 27 2.5
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 26 4.4
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 5.8
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 26 5.8
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po... 26 5.8
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 5.8
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 25 7.7
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 25 7.7
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 7.7
>SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 42.3 bits (95), Expect = 6e-05
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Frame = +1
Query: 394 VIHLLETLRED--YLLGLITNGPSRAQWQKIERLGLRKYFDCVLVSGDLPWEKPDQHIF- 564
+I L+ +E+ Y++G+I+N R + +E G+ D S D+ +EKP + IF
Sbjct: 111 LIDFLKRNKEERKYIIGIISNTDERIR-TVLEDYGIDHLIDIYAFSYDVGFEKPSREIFD 169
Query: 565 ---HEACKLLN--VEPRNCIMVGDKLETDIKGGKEAE 660
+A KLL ++P C+ +GD L D+ + +
Sbjct: 170 YAMEKAVKLLGQEIQPEECMHLGDDLIKDVSAARNIQ 206
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 29.5 bits (63), Expect = 0.47
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 201 VFGKAIFILQQFHELITSFSISFSCL 124
+F K IF LQ FHE SF+CL
Sbjct: 452 IFEKMIFTLQHFHEDFLRLQNSFNCL 477
>SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 237
Score = 29.1 bits (62), Expect = 0.62
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +1
Query: 106 LDNTLIQTRKGDTKACNKLVELLQNEYGLPKDMAVESGSTFLRAFRARPD 255
+ N+ + D + + L E LQNE G+P +++ S +L A + D
Sbjct: 162 ISNSQLSDHNPDFQVLSDLRESLQNELGIPLQLSMGMSSDYLLAIKYGSD 211
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = -3
Query: 653 SFPPLISVSSLSPTIMQLRGSTLR--SLHASW 564
+FP SV+SLSP++ QL + +R ++H W
Sbjct: 105 TFPEFSSVNSLSPSLFQLIVNRMRFDAIHPEW 136
>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 298
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +1
Query: 544 KPDQHIFHEACKLLNVEPRNCIMVGDKLETDIKGGKEAELAATVWI 681
KP + +N + + VGD+L TDI+ K + L ++ +
Sbjct: 220 KPYDEMMEAIIANVNFDRKKACFVGDRLNTDIQFAKNSNLGGSLLV 265
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -3
Query: 206 AMSLGRPYSFCSSSTSLLQALVSPFLVC-IKVLSKSNSIAETS 81
+MSLGRP++ + T++ + P VC I++ S+SN I + S
Sbjct: 379 SMSLGRPFAISNDQTNVHE----PSNVCDIQISSQSNCIPDPS 417
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +1
Query: 13 YSLILHFAA*QIMANSGYFDENSDVSAILFDLDNTLIQTRKGDTKACNKLVE 168
+ + H A + N G+F +S VS +LD+ + +G A KL E
Sbjct: 333 HQIFAHTAFSNLFGNVGFFTGDSIVSKNPIELDDEDYEFMQGFESAAGKLAE 384
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 194 GRPYSFCSSSTSLLQALVS 138
G Y FCSS TSL+ L++
Sbjct: 561 GTSYDFCSSYTSLMDRLIN 579
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 307 LPKNYKHIAKSVSTE 351
LPKNY ++AKS S E
Sbjct: 345 LPKNYAYVAKSTSPE 359
>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = -1
Query: 406 VNVLRHL*EPNTEILALAIRSTHFWRCVCSFLVSSYAIDALAIRAMRTIRHQVEP 242
+ +L+HL P A+ I T+ +CS++ +S + A T H +EP
Sbjct: 11 LQLLKHLGNPQESFCAVQIAGTNGKGSICSYIYTS-LLQAAIKTGRYTSPHFLEP 64
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 193 PKDMAVESGSTFLRAFRARPDDE 261
P+D +E F+ AF A PD+E
Sbjct: 1161 PQDTVIEEDKDFVEAFFAIPDEE 1183
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 466 QWQKIERLGLRKYFDCVLVSGDLP 537
QWQ ++ K+F+ L S DLP
Sbjct: 5 QWQSVQNRTFTKWFNTKLSSRDLP 28
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 301 NCLPKNYKHIAKSVSTEWLRLRFRYLALTNDVIHLLETLREDYLLGLITNG 453
NC KN H + + E + Y+A+ N + HL E ++ LL + +G
Sbjct: 42 NCTHKNDDHSSPPLPEEEM-----YIAIFNYIEHLFEKIKPKKLLYMAVDG 87
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 203 MSLGRPYSFCSSSTSLLQALVSPFLVCIKVLSK 105
M L RP F S+ L ++ SPFL C+ +SK
Sbjct: 505 MGLSRPGPFHSALRDLKNSIKSPFL-CLIYISK 536
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,976,698
Number of Sequences: 5004
Number of extensions: 63593
Number of successful extensions: 222
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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