Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6j17
(670 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 31 0.15
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 31 0.15
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 28 1.1
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 28 1.4
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 27 3.2
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c... 27 3.2
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 26 4.3
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb... 26 5.6
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 26 5.6
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 26 5.6
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 25 7.5
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 25 7.5
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces... 25 9.9
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar... 25 9.9
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz... 25 9.9
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 31.1 bits (67), Expect = 0.15
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 75 QKSFPKNKFLFSITIVSIATLVGYVHYRYVS-HLFENDRNFAYLSELEREM 224
+KS+P+ + F + +S YVH+RY S H DR AY+ LE+E+
Sbjct: 30 RKSYPEKQISFDVVTLSEPHKEEYVHWRYSSAHEGIPDRR-AYVIVLEKEV 79
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 31.1 bits (67), Expect = 0.15
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 15 G*SVNIKMEENTVAVEKVVKQKSFPKNKFLFSITIVSIATLVGYVHYRYVSHL 173
G S N NT+ EK++ + +F ++ F+ +TI+ L G + RY+ L
Sbjct: 5 GFSTNGSGSLNTIVCEKLLFKPNFVQDSFIIGMTILCSVILYGSGNLRYIDAL 57
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 432 EHRQCHIIDRGHDLSPVE-SCVGLGQPIYFYLE 527
E+ + H+ RG+ S E SC GQP++FY E
Sbjct: 125 ENNKTHLSPRGNYPSEAEKSCDFYGQPLHFYRE 157
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 30 IKMEENTVAVEKVVKQKSFPKNKFLFSI 113
+K ENT A+ K+V K F N+++FS+
Sbjct: 773 VKEAENTSAIGKLVLSKLFLTNQWIFSL 800
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = -1
Query: 460 LSIMWHCLCSVVLSQTSKYRYNAAINTSGCILNRLNAFTSFGCSTLLSNIN 308
LS++ L +V S + Y + S C L +F C+T L N++
Sbjct: 672 LSVIIMALMFLVYRLYSPFTYMTTLTKSSCRALELKGSWNFHCNTYLDNLS 722
>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 240 MGFYYSYYKTLVHEKPFVAGISKLMFDKSVEHPKEVN 350
+GF Y Y KTLV+ F G ++V PKE N
Sbjct: 28 LGFLYKYQKTLVYPSAFPQGSR-----ENVPTPKEFN 59
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 114 TIVSIATL-VGYVHYRYVSHLFENDRNFAYLSELEREMSF 230
T+V++ T+ V Y H+ +S +N YLS EMS+
Sbjct: 681 TLVNVETVKVNYNHFTSISDAISAMQNLKYLSCTNCEMSY 720
>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 436 CSVVLSQTSKYRYNAAINTSGCI 368
CSVVL +YR A+IN I
Sbjct: 127 CSVVLEDQKRYRIRASINMDSII 149
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 5.6
Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Frame = +3
Query: 60 EKVVKQKSFPKNKFLFSITIVSIATLV-GYVHYRYVSHLFENDRNFAYLSELEREMSFRT 236
EK ++S + FL + + + + + G V Y + LF RNF L+ +R +
Sbjct: 301 EKTELEESTRPSNFLSTYFVSPLVSAIDGTVDYLHGKSLFPEKRNFKELTMRKRSIVTPE 360
Query: 237 EMGFYYSYYKTLVHEKPFVAGISKLMFDKSVEHPKEVNAFNRFNIH 374
+ Y Y + E + +S+ KS + + F+ F H
Sbjct: 361 DSEEVYPY----ISEFVAASNVSEEKGPKSFANLAFITIFSHFFYH 402
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 196 HTSLSWRGRCHSV 234
HT+L WR RC SV
Sbjct: 34 HTTLIWRNRCESV 46
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 201 LSELEREMSFRTEMGFYYSYYKTLVHEKPFVAGISKLMFDKSVEHPKEV 347
LS++ R + +GFY + +VH++ + I K + D + + K V
Sbjct: 372 LSDIVRLYNVIEILGFYREAFSKIVHDECIILRIIKTLEDFTYQRMKTV 420
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = -3
Query: 437 VLGCVEPNLKVSVQCCNQY--LRMYIKSIECIHFFWMLH 327
VL C++ +LK++ C +Q L+++I +E +++ H
Sbjct: 667 VLECLQKSLKIADACMDQLTSLKLFINILERYFYYYDQH 705
>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -3
Query: 422 EPNLKVSVQCCNQYLRM 372
+PN +V V C N YL M
Sbjct: 171 DPNTRVEVWCSNDYLNM 187
>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 408 FEVWLNTTEHRQCHIIDRGHDLSPVESCVGLG 503
F+ NTT+ +CH I + H + + G+G
Sbjct: 425 FDPCQNTTDFMKCHKIIKEHGIDTIFVLCGMG 456
>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 451
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 273 VHEKPFVAGISKLMFDKSVEHPKEVNAFNRFNIHPEVLIAALYRYFE 413
VHE + SKL+ D ++P NA I+ VL + L + E
Sbjct: 233 VHEDADMELASKLVLDGKTDYPAACNAIETLLINEAVLSSHLPKIAE 279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,711,939
Number of Sequences: 5004
Number of extensions: 57297
Number of successful extensions: 182
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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