Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6j17
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0159 - 18619674-18619685,18619916-18619993,18620504-18620827     33   0.21 
05_07_0177 + 28171863-28171980,28173003-28173082,28173173-281732...    29   2.5  
02_05_0900 + 32616049-32616135,32616593-32616695,32616925-326170...    29   4.4  
10_01_0238 + 2496974-2497618,2497738-2497980,2498202-2499211,249...    28   7.7  
07_03_0458 + 18406844-18408877                                         28   7.7  
05_06_0206 + 26369089-26369143,26369627-26369733,26369814-263706...    28   7.7  

>05_04_0159 - 18619674-18619685,18619916-18619993,18620504-18620827
          Length = 137

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +3

Query: 30  IKMEENTVAVEKVVKQKSFPKNKFLFSITIVSIATLVGYVHYRYVSHLFENDRNFAYLSE 209
           ++   N +  + ++KQ S    +  F+    +   L+G+VHYR+V    E D    Y+ E
Sbjct: 30  VRQSSNAITTQNIMKQDS----RLEFTHEACNEDRLIGFVHYRFV---LEEDVPVVYVYE 82

Query: 210 LEREMS 227
           L+ E S
Sbjct: 83  LQMESS 88


>05_07_0177 +
           28171863-28171980,28173003-28173082,28173173-28173259,
           28173796-28173913,28174070-28174126,28174217-28174281,
           28174390-28174473,28174599-28174649,28174734-28174796,
           28174889-28174935,28175024-28175093,28175363-28175425,
           28175523-28175612,28175700-28175738,28175820-28176047,
           28176348-28176433,28176515-28176563,28176972-28177052,
           28177143-28177236,28177396-28177598
          Length = 590

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 530 GLKIKVDWLTQADAALNRTQIVPSVYNVALSVL 432
           G K+ VDW+   D   +   + P  YN A S+L
Sbjct: 311 GRKLVVDWVPSTDLEDSTATVAPDAYNTAWSLL 343


>02_05_0900 +
           32616049-32616135,32616593-32616695,32616925-32617004,
           32617118-32617447,32617623-32617735,32617861-32617903,
           32617968-32618045,32618328-32618339
          Length = 281

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +3

Query: 30  IKMEENTVAVEKVVKQKSFPKNKFLFSITIVSIATLVGYVHYRYVSHLFENDRNFAYLSE 209
           ++   N +  + ++KQ S  +    F+    +   L+G+VHYR+V    E D    Y+ E
Sbjct: 122 VRQSSNAITTQNIMKQDSGLE----FTHEACNEDRLIGFVHYRFV---LEEDVPVVYVYE 174

Query: 210 LE 215
           L+
Sbjct: 175 LQ 176


>10_01_0238 +
           2496974-2497618,2497738-2497980,2498202-2499211,
           2499329-2499370,2499465-2499492
          Length = 655

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
 Frame = +3

Query: 177 ENDRNFAYLSE-----LEREMSFRTEMGFYYSYYKTLVHEKPFVAGISKLMFDKSVEHPK 341
           +N+ N  Y +E     +    S +   G Y   YK ++ +  FVA    +  DK  E  K
Sbjct: 27  DNNHNITYFTEDDIKRITNNYSTKLGKGAYGEVYKGVIGDNRFVAVKKFIRVDKLDEFAK 86

Query: 342 EVNAFNRFNIHPEVL 386
           EV    + N H  V+
Sbjct: 87  EVIVHTQVN-HKNVV 100


>07_03_0458 + 18406844-18408877
          Length = 677

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/79 (24%), Positives = 31/79 (39%)
 Frame = +3

Query: 153 YRYVSHLFENDRNFAYLSELEREMSFRTEMGFYYSYYKTLVHEKPFVAGISKLMFDKSVE 332
           Y     + E +R  A L E  R           +   K ++ +  F   ++K   D  V 
Sbjct: 306 YSLKRKMLEQERKIAELMEERRIAELTERRTVAFREIKAILQDIGFERLVTKEKIDSIVG 365

Query: 333 HPKEVNAFNRFNIHPEVLI 389
           +PK+V+    F+    VLI
Sbjct: 366 NPKQVSTSEAFSGKSSVLI 384


>05_06_0206 +
           26369089-26369143,26369627-26369733,26369814-26370647,
           26370781-26370939,26371070-26371410,26373894-26373991,
           26374244-26374350,26374715-26375266,26375366-26375524,
           26375631-26376005
          Length = 928

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 373 CILNRLNAFTSFGCSTL 323
           C+L RL+  T FGC+TL
Sbjct: 248 CVLQRLSKLTVFGCTTL 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,222,858
Number of Sequences: 37544
Number of extensions: 356184
Number of successful extensions: 882
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)