Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6j17
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorte...   185   2e-47
Z75953-1|CAB00098.1|  400|Caenorhabditis elegans Hypothetical pr...    33   0.14 
AF045642-12|AAD34648.1|  348|Caenorhabditis elegans Hypothetical...    30   1.3  
Z72503-7|CAA96597.1|  424|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z30423-12|CAA83006.2|  486|Caenorhabditis elegans Hypothetical p...    29   3.0  
AF031935-1|AAB87066.1|  486|Caenorhabditis elegans UNC-47 protein.     29   3.0  
Z93381-3|CAB07606.1|  362|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z78414-1|CAB01669.2|  472|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z70207-2|CAA94130.2|  635|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U40415-9|AAK39249.3|  281|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AJ512338-1|CAD54511.1|  635|Caenorhabditis elegans trehalase pro...    28   6.9  
AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel...    27   9.1  
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    27   9.1  
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    27   9.1  

>L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 19 protein.
          Length = 683

 Score =  185 bits (451), Expect = 2e-47
 Identities = 81/186 (43%), Positives = 127/186 (68%), Gaps = 2/186 (1%)
 Frame = +3

Query: 114 TIVSIATLVGYVHYRYVSHLFENDRNFAYLSELEREMSFRTEMGFYYSYYKTLVHEKPFV 293
           ++V I  LVGY++Y++V  LFEND++F++L++ EREM++RTEMG YYSYYKT+++   F+
Sbjct: 30  SVVIIGLLVGYINYQHVYTLFENDKHFSHLADFEREMAYRTEMGLYYSYYKTIINAPSFL 89

Query: 294 AGISKLMFDKSVEHPKEVNAFNRFNIHPEVLIAALYRYFEVWLNTT--EHRQCHIIDRGH 467
            G+ ++  D   EH  E+N  NRFN++PEV++A LYR F  +  +   +   C  ++RG 
Sbjct: 90  EGVQEITHDTVTEHGHEINTLNRFNLYPEVILAFLYRPFRAFAKSANWQIELCWQVNRG- 148

Query: 468 DLSPVESCVGLGQPIYFYLEAIWLLAGLNVTALFLHATALSNSILGGIFTVMQYFANHSE 647
           +L PVESC G+G P YFY+  ++++AG   +++F     +S+SI GG  +V+ +  NH E
Sbjct: 149 ELRPVESCEGIGNPHYFYITGVFIVAGTVASSIFYLGVLVSDSIFGGFLSVLCFAFNHGE 208

Query: 648 CTRVMW 665
            TRV W
Sbjct: 209 ATRVQW 214


>Z75953-1|CAB00098.1|  400|Caenorhabditis elegans Hypothetical
           protein F57F5.1 protein.
          Length = 400

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 29/91 (31%), Positives = 41/91 (45%)
 Frame = +3

Query: 219 EMSFRTEMGFYYSYYKTLVHEKPFVAGISKLMFDKSVEHPKEVNAFNRFNIHPEVLIAAL 398
           + SF+ E+G Y+S Y   + +        +LM  K VE P+E   F     HPEV  AA+
Sbjct: 97  QTSFKAELGSYFSSYPDTIKK--------QLMGAKMVEIPEEYRVFEM--THPEVEDAAV 146

Query: 399 YRYFEVWLNTTEHRQCHIIDRGHDLSPVESC 491
              F+   + T    C  I +  D S   SC
Sbjct: 147 PDSFD---SRTAWPNCPSISKIRDQSSCGSC 174


>AF045642-12|AAD34648.1|  348|Caenorhabditis elegans Hypothetical
           protein C17H12.8 protein.
          Length = 348

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 27/87 (31%), Positives = 38/87 (43%)
 Frame = -3

Query: 533 DGLKIKVDWLTQADAALNRTQIVPSVYNVALSVLGCVEPNLKVSVQCCNQYLRMYIKSIE 354
           +GL    D +T  D  L RT IV S    A  V   + PN     Q   + + M+     
Sbjct: 68  NGLNGNNDMITVIDEQLTRT-IVSS--RSAKFVHFYIFPNTTTKFQVITKSVNMHSSFRI 124

Query: 353 CIHFFWMLHTLVEHQFRYPSYKWLLMN 273
            +HF  ML+T V H    P  K+ ++N
Sbjct: 125 VVHFERMLNTTVTH-LGNPDMKYFMLN 150


>Z72503-7|CAA96597.1|  424|Caenorhabditis elegans Hypothetical
           protein C26C6.4a protein.
          Length = 424

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
 Frame = +3

Query: 57  VEKVVKQKSFPKNKFLFSITIVS----IATLVGYVHYRYVSHLFENDRNFAYLSELEREM 224
           +EK  K   +PK  F FS+ +V     +A  + +       H+         ++ + +E+
Sbjct: 4   IEKKKKNIWWPKKSFSFSVLVVLFIFVVAAALPFTFGILSPHILRQRNIVVTVNRVSKEL 63

Query: 225 SFRTEMGFYYSYYKTLVHEKPFVAGISKLMFDKSVEHPKEVNAFNRFNIHPEVLIAALYR 404
           SF  ++   Y++ +     K        +  D S ++ K     N+F IH E  I  +++
Sbjct: 64  SFE-DIHNEYNFMQFSEQLKAMPKPPYIIFEDNSSQNQKVKFQQNKFAIHIEEAIINIFQ 122

Query: 405 Y 407
           Y
Sbjct: 123 Y 123


>Z30423-12|CAA83006.2|  486|Caenorhabditis elegans Hypothetical
           protein T20G5.6 protein.
          Length = 486

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +3

Query: 69  VKQKSFPKNKFLFSITIVSIATLVGYVHYRYVSHLF 176
           V Q SF  +   FS+ I ++ T+VG V + Y SH+F
Sbjct: 250 VSQWSF--STITFSLNINTLPTIVGMVVFGYTSHIF 283


>AF031935-1|AAB87066.1|  486|Caenorhabditis elegans UNC-47 protein.
          Length = 486

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +3

Query: 69  VKQKSFPKNKFLFSITIVSIATLVGYVHYRYVSHLF 176
           V Q SF  +   FS+ I ++ T+VG V + Y SH+F
Sbjct: 250 VSQWSF--STITFSLNINTLPTIVGMVVFGYTSHIF 283


>Z93381-3|CAB07606.1|  362|Caenorhabditis elegans Hypothetical
           protein F28G4.3 protein.
          Length = 362

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
 Frame = +3

Query: 159 YVSHLFENDRNFAYLSELEREMSFRTEMGFYYSYYKTLVHEKPFVAGISKLMFDK--SVE 332
           +VS + EN  N A +S         T     YS   T ++ K   A    +   K  + E
Sbjct: 108 FVSAISENHLNQAMISIHSFYKLNPTGRYILYSLNLTELNIKTLKAKFKDIEIRKFNTDE 167

Query: 333 HPKEVNAFNRFNIHPEVLIAALYRYFEVW 419
           +PK VN ++ +   P ++  AL  +  +W
Sbjct: 168 YPKYVNNWSEYRFKPLIVAQALKEFPNIW 196


>Z78414-1|CAB01669.2|  472|Caenorhabditis elegans Hypothetical
           protein W09D12.1 protein.
          Length = 472

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +3

Query: 189 NFAYLSELEREMSFRTEMGFYYSYYKTLVHEKPFVAGISKLMFDKSVEHP 338
           N   + +  +E +++++     S Y TL+HE   + G+    +  S+ HP
Sbjct: 191 NSHIILDKNQEWAYKSQAPMGISLYHTLLHEIGHILGLPHTFYRGSIMHP 240


>Z70207-2|CAA94130.2|  635|Caenorhabditis elegans Hypothetical
           protein F15A2.2 protein.
          Length = 635

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 510 IYFYLEAIWLLAGLNVTALFLHATALSNSILGGIFTV 620
           +YFY +  W++ GL V+ +F     + N+    + T+
Sbjct: 187 VYFYWDTFWIIKGLLVSRMFETTKGIINNFSNLVVTL 223


>U40415-9|AAK39249.3|  281|Caenorhabditis elegans Hypothetical
           protein K02G10.1 protein.
          Length = 281

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 450 IIDRGHDLSPVESCVGLGQPIYFYLEAIWLLAGLNV 557
           ++ + H      +CVGLG   YF +   W   GL +
Sbjct: 154 VLRKDHHCFITGACVGLGNQRYFMVFLFWCAIGLTI 189


>AJ512338-1|CAD54511.1|  635|Caenorhabditis elegans trehalase
           protein.
          Length = 635

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 510 IYFYLEAIWLLAGLNVTALFLHATALSNSILGGIFTV 620
           +YFY +  W++ GL V+ +F     + N+    + T+
Sbjct: 187 VYFYWDTFWIIKGLLVSRMFETTKGIINNFSNLVVTL 223


>AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel
          type/putative nematodecalcium channel protein 1,
          isoform b protein.
          Length = 978

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 71 HNFFNCNSIFL 39
          HNFFNC S+FL
Sbjct: 7  HNFFNCKSVFL 17


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
          type/putative nematodecalcium channel protein 1,
          isoform a protein.
          Length = 1562

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 71 HNFFNCNSIFL 39
          HNFFNC S+FL
Sbjct: 7  HNFFNCKSVFL 17


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
          type/putative nematodecalcium channel protein 1,
          isoform c protein.
          Length = 1913

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 71 HNFFNCNSIFL 39
          HNFFNC S+FL
Sbjct: 7  HNFFNCKSVFL 17


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,170,007
Number of Sequences: 27780
Number of extensions: 328073
Number of successful extensions: 890
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)