Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6j15
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...   249   4e-67
SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr ...    30   0.41 
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   2.2  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    27   3.8  
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    27   3.8  
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...    26   5.0  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    26   5.0  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    26   5.0  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    26   6.6  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    26   6.6  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    25   8.8  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    25   8.8  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   8.8  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score =  249 bits (609), Expect = 4e-67
 Identities = 109/174 (62%), Positives = 138/174 (79%)
 Frame = +2

Query: 233 ISKPAPEWEATAVVNGEFTQLSLSSFKGKYLVFFFYPLDFTFVCPTEILAFSERIEEFRK 412
           I KPAP+++ TAVVNG F ++ L+ +KGK++   FYPLDFTFVCPTEI+AFSE   +F +
Sbjct: 5   IGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAASKFAE 64

Query: 413 INTEVVACSVDSHFTHLAWINTPRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDLGHTLR 592
            N +V+  S DS ++HLA+INTPRKEGGLG INIPLL+D +H +++DYGV +ED G   R
Sbjct: 65  RNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAGVAFR 124

Query: 593 GLFIIDDKGILRQITMNDLPVGRSVDETLRLVQAFQYTDNHGEVCPAGWKPGQD 754
           GLF+ID KG+LRQIT+NDLPVGRSVDE LRL+ AFQ+ + HGEVCPA W  G D
Sbjct: 125 GLFLIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEHGEVCPANWHKGSD 178


>SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 192

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +3

Query: 288 LNFRYQVSKESTLYFSSILWILHSYALRKFW----PSLKEL 398
           LN R QV   + L  S I+WI HS  + K W    P +K L
Sbjct: 3   LNRRIQVILPTLLILSFIIWIFHSVMVDKDWRLFMPEIKSL 43


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 417 FIFLNSSILSEK-AKISVGHTNVKSRG*KKNTRYFPLKLDNES*VNS 280
           ++ + SS+ S + A ++ G+ N K  G   NT+YF   L+N S  NS
Sbjct: 174 YLSVPSSMPSRREAGMAYGYQNYKRGGYTPNTQYFEEPLNNTSFPNS 220


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 24/100 (24%), Positives = 40/100 (40%)
 Frame = +2

Query: 344 LDFTFVCPTEILAFSERIEEFRKINTEVVACSVDSHFTHLAWINTPRKEGGLGKINIPLL 523
           LD        ILA       +R+ + ++   S+D+    + W +TP        + +   
Sbjct: 634 LDVIMEANEVILAIQSSALAYRRESQKIYKLSIDTFGEEVPWTSTPET-----LVLLCRQ 688

Query: 524 SDLTHSIAKDYGVYLEDLGHTLRGLFIIDDKGILRQITMN 643
            +LT S          D+ +T    F I DKG+LR +  N
Sbjct: 689 FELTRSALVQSHQGTSDVENT----FKIKDKGVLRNVVSN 724


>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = -2

Query: 381 AKISVGHTNVKSRG*KKNTRYFPLKLDNES*VNSPLTTAVASHSGAGFEIIAFVNC 214
           AK      NVK+     N++++    D E   N P +     H GAG+E +    C
Sbjct: 44  AKCKTEFQNVKAICRTYNSKFYMGIFDKEIIDNLPPSVKFICHLGAGYETVDVAAC 99


>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 147 IRVTRLEVVMFFRVEREKSIINYNLQKL 230
           IRV R EVV+  RV++EK  I+ + +++
Sbjct: 63  IRVGRNEVVVVLRVDKEKGYIDLSKRRV 90


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 488 EGGLGKINIPLLSDLTHSIAKDYGVYLEDLGHTLRGLF 601
           + G+G I   ++  L HS  KD  V+ E L  T   LF
Sbjct: 274 QSGIGNIANAIIGGLAHSPFKDLEVWTEVLQDTFLPLF 311


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 101 VLLSVMTCSSSLFDGDSCYSFGSGNVFPGGARK-IDHKLQFTKAM 232
           V+  V+T   +L D D+ Y+  SGN++ GG  K I   L + K++
Sbjct: 23  VIYQVLTDRFAL-DEDNFYAKASGNLYLGGTWKGITRNLDYIKSL 66


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = -1

Query: 730 WANFTMIISVLECL---NKSQCFIN*TSYWQIIHCYLS 626
           WA FT I SVL C    +  Q   N +  W+ I   LS
Sbjct: 238 WAYFTFIASVLVCFWDESNHQEIANISDMWKTIRAALS 275


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +2

Query: 173 NVFPGGARKIDHKLQFTKAMISKPAPEWEATAVVNGEFTQLSLSSFKGKYLVF 331
           + F      ID+  ++TKA + KP    E     +    + S  +FKG   +F
Sbjct: 18  HAFASSVLAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIF 70


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 512 IPLLSDLTHSIAKDYGVYLEDL 577
           I L+ D+ + ++K +G+Y EDL
Sbjct: 468 IELIDDIRYFLSKRFGIYHEDL 489


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 242 PAPEWEATAVVNGEFTQLSLSSFKGKYLVFFFYPLDFTFVCPTE 373
           P P +E  +  +G+F   S +  K K +    YP   TF   TE
Sbjct: 271 PEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 608  QL*TILLKYGPDPPNKPRS 552
            QL T LL Y P+PP+KP +
Sbjct: 1101 QLVTELLGYLPEPPSKPNA 1119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,148,992
Number of Sequences: 5004
Number of extensions: 66370
Number of successful extensions: 171
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)