Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6j15
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021...   136   2e-32
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700...    88   6e-18
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957...    70   2e-12
06_01_0671 - 4899611-4899829,4900870-4901448                           70   2e-12
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080     56   4e-08
03_06_0234 - 32535281-32535919,32536121-32536860,32536911-32536953     29   3.0  
01_06_1219 - 35490475-35491635                                         28   6.9  

>02_04_0116 +
           19901546-19901737,19901825-19901899,19902034-19902115,
           19902219-19902298,19903279-19903482,19903625-19903750,
           19903872-19903985,19904802-19904918
          Length = 329

 Score =  136 bits (328), Expect = 2e-32
 Identities = 60/100 (60%), Positives = 77/100 (77%), Gaps = 1/100 (1%)
 Frame = +2

Query: 452 FTHLAWINTPRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDLGHTLRGLFIIDDKGILRQ 631
           F+HLAW+ T RK GGLG +  PL+SD+T SI+K +GV + D G  LRGLFIID +G+++ 
Sbjct: 212 FSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQGIALRGLFIIDKEGVIQH 271

Query: 632 ITMNDLPVGRSVDETLRLVQAFQYT-DNHGEVCPAGWKPG 748
            T+N+L +GRSVDET+R +QA QY  DN  EVCPAGWKPG
Sbjct: 272 STINNLAIGRSVDETMRTLQALQYVQDNPDEVCPAGWKPG 311



 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 40/74 (54%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
 Frame = +2

Query: 230 MISKPAPEWEATAVVNGEFTQLSLSSFKGK-YLVFFFYPLDFTFVCPTEILAFSERIEEF 406
           ++   AP+++A AV + EF  + LS + GK Y++ FFYPLDFTFVCPTEI AFS+R +EF
Sbjct: 69  LVGNKAPDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYDEF 128

Query: 407 RKINTEVVACSVDS 448
            K+NTE++  S+DS
Sbjct: 129 EKLNTEILGVSIDS 142


>04_03_0889 +
           20568984-20569037,20569271-20569345,20569981-20570088,
           20572066-20572179,20572393-20572509
          Length = 155

 Score = 88.2 bits (209), Expect = 6e-18
 Identities = 39/66 (59%), Positives = 52/66 (78%), Gaps = 1/66 (1%)
 Frame = +2

Query: 557 GVYLEDLGHTLRGLFIIDDKGILRQITMNDLPVGRSVDETLRLVQAFQYT-DNHGEVCPA 733
           GV ++ +G  LRGLFIID +G+++  T+N+L +GRSVDETLR +QA QY  +N  EVCPA
Sbjct: 73  GVSIDSVGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPA 132

Query: 734 GWKPGQ 751
           GWKPG+
Sbjct: 133 GWKPGE 138



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 24/46 (52%), Positives = 28/46 (60%)
 Frame = +2

Query: 356 FVCPTEILAFSERIEEFRKINTEVVACSVDSHFTHLAWINTPRKEG 493
           FV   EI AFS+R EEF KINTEV+  S+DS    L  +    KEG
Sbjct: 48  FVSSAEITAFSDRYEEFEKINTEVLGVSIDSVGIALRGLFIIDKEG 93


>07_03_1427 +
           26495072-26495148,26495323-26495468,26495581-26495729,
           26495829-26496224
          Length = 255

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 7/161 (4%)
 Frame = +2

Query: 290 QLSLSSFKGK-YLVFFFYPLDFTFVCPTEILAFSERIEEFRKINTEVVACSVDSHFTHLA 466
           ++ +  F G  Y++ F +P DFT VC TE+ A +   +EF K   +++  S D   +H  
Sbjct: 56  KIRIHDFVGDTYVILFSHPGDFTPVCTTELAAMAGYAKEFDKRGVKLLGISCDDVQSHKD 115

Query: 467 WINTPRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDL-----GH-TLRGLFIIDDKGILR 628
           WI          ++  P+++D +    K   +   D      GH   R L I+     ++
Sbjct: 116 WIKDIEAYKPGNRVTYPIMADPSREAIKQLNMVDPDEKDSNGGHLPSRALHIVGPDKKVK 175

Query: 629 QITMNDLPVGRSVDETLRLVQAFQYTDNHGEVCPAGWKPGQ 751
              +    VGR++DE +R V A Q    H    P  WKPG+
Sbjct: 176 LSFLYPACVGRNMDEVVRAVDALQTAAKHAVATPVNWKPGE 216


>06_01_0671 - 4899611-4899829,4900870-4901448
          Length = 265

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 2/136 (1%)
 Frame = +2

Query: 293 LSLSSFKGKYLVFFFYPLDFTFVCPTEILAFSERIEEFRKINTEVVACSVDSHFTHLAWI 472
           +SLS FKG+ +V +FYP D T  C  +  AF +  E+F+K   EV+  S D   +H  + 
Sbjct: 137 VSLSKFKGRPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDAASHKEF- 195

Query: 473 NTPRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDLGHTLRG--LFIIDDKGILRQITMND 646
              +K+    K+   LLSD  + + K++GV   DL  TL G   +++D  G+++ I  N 
Sbjct: 196 ---KKK---YKLPFTLLSDEGNKVRKEWGV-PADLFGTLPGRQTYVLDKNGVVQYIYNNQ 248

Query: 647 LPVGRSVDETLRLVQA 694
               + + ETL+++Q+
Sbjct: 249 FQPEKHIGETLKILQS 264


>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
          Length = 220

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 7/161 (4%)
 Frame = +2

Query: 290 QLSLSSFKGK-YLVFFFYPLDFTFVCPTEILAFSERIEEFRKINTEVVACSVDSHFTHLA 466
           ++ L  F G  Y++ F +P DFT VC TE+   +    EF K   +++  S D   +H  
Sbjct: 21  KIRLHDFVGDAYVIIFSHPADFTPVCTTELSEMAGYAGEFDKRGVKLLGFSCDDVESHKD 80

Query: 467 WINTPRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDLGHTL------RGLFIIDDKGILR 628
           WI          ++  P+++D      +   +   D   T       R L I+     ++
Sbjct: 81  WIKDIEAYKPGRRVGFPIVADPDREAIRQLNMIDADEKDTAGGELPNRALHIVGPDKKVK 140

Query: 629 QITMNDLPVGRSVDETLRLVQAFQYTDNHGEVCPAGWKPGQ 751
              +     GR++ E LR   A      H    P  WKPG+
Sbjct: 141 LSFLFPACTGRNMAEVLRATDALLTAARHRVATPVNWKPGE 181


>03_06_0234 - 32535281-32535919,32536121-32536860,32536911-32536953
          Length = 473

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -2

Query: 186 PGKTLPLPNE*HESPSKSEDEQVITLKSTV 97
           P K +P PN   E P+K  DE+V+T K TV
Sbjct: 126 PEKVVPDPNG--ELPNKDPDEEVVTPKDTV 153


>01_06_1219 - 35490475-35491635
          Length = 386

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 198 FRAPPGKTLPLPNE*HESPSKSEDEQVITLKSTVMMIN 85
           FR+PP +  P P     +PS S+  + +TL+  +   N
Sbjct: 249 FRSPPAQYAPSPLAGASNPSSSQSRRFVTLRDAMQEEN 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,423,059
Number of Sequences: 37544
Number of extensions: 397836
Number of successful extensions: 943
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)