Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6j13
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 44 3e-05
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 1.8
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 24 3.1
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma... 27 3.1
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 26 4.2
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 26 5.5
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 26 5.5
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c... 26 5.5
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 25 7.3
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa... 25 7.3
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa... 25 9.6
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 9.6
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 25 9.6
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po... 25 9.6
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 43.6 bits (98), Expect = 3e-05
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +3
Query: 309 ITDIDKQNQAKYFYFYQAEDGQQVFLNSLNVRILNESWGALAAAPTTITGRVLHRETLPL 488
+ D+ A + FYQ ++L+ L++RIL ++G+ P + RV + L
Sbjct: 433 LNDVSGSEIADAYLFYQPFAHSHIYLSPLDIRILKSAFGSYENFPDELVPRVERISSGHL 492
Query: 489 -TEQTRKHMPYTAHLPLYCSVDIVELE 566
+ R+ Y AHLP C V +E +
Sbjct: 493 VNSELRQRFKYMAHLPEGCEVAFIECD 519
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.5 bits (58), Expect = 1.8
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Frame = +3
Query: 36 VENNEVPPPIVYEKQEVNENKLDWFNVTDDGAACMEDIQNEIANIDFKETKWNPD--APE 209
V NN P + ++ + N +L+ G EDI N + D E N + A +
Sbjct: 3887 VANNGFCSPDLPQEGKSNSGELESGTGLGSGVGA-EDITNTLNEDDDLEELANEEDTANQ 3945
Query: 210 FSLNEGTTIQA-STQDGIN-DVFLSETDNTDTNKYITDIDKQ 329
L+E + S +G+ D +SE +N+D+ + D+D++
Sbjct: 3946 SDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEE 3987
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 24.2 bits (50), Expect(2) = 3.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 168 IDFKETKWNPDAPEFSLN 221
+D+K+ K PDAP F+ N
Sbjct: 84 VDWKQEKPKPDAPSFADN 101
Score = 20.6 bits (41), Expect(2) = 3.1
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3
Query: 69 YEKQEVNENKLDW 107
Y E +ENK+DW
Sbjct: 74 YFPPEFDENKVDW 86
>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 434
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 534 LYCS-VDIVELELQPPYVTANALENFTEEL 620
LY S + I EL PP+V A+E+F E+L
Sbjct: 227 LYVSPLAISELRSTPPFVGGGAVEDFKEDL 256
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 459 RVLHRETLPLTEQTRKHMPYTAHLPLYCSVDIVELE 566
+V+H PL TR M Y +LP Y S + ++ E
Sbjct: 475 KVMHSYDPPLYNDTRAWMIYEENLPSYLSSNFLKEE 510
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -2
Query: 324 CQYLLCIYLCPYYQFLIEKHHLFHLELKPV**YPHLERIQEHQGSIWFL 178
C Y+L + ++ + LE+ + +ERIQ H G+IW L
Sbjct: 435 CGYVLAASFINNDKCIVSAYKSGELEVYDIASSSLIERIQAHDGAIWDL 483
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 200 IRVPFGFFEINICYFILNIFHTSSSIVSNIKPIKFVF 90
+R P GFFE ILN F V + + F+F
Sbjct: 988 LRAPMGFFETTSSGRILNRFSNDVYKVDEVVSLTFMF 1024
>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 135
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -1
Query: 469 CRTLPVMVVGAAASAPQDSFRIRTFKLFKNTC 374
C T+ + VV +SA SFR TF L K TC
Sbjct: 31 CFTVMLCVVQQCSSA-MTSFRCPTFSLSKYTC 61
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 25.4 bits (53), Expect = 7.3
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 307 YLF-VSVLSVSDRKTSFIPS*VEACIVVPSFRENSGASGF 191
YLF V LS+S S P VE C V F+EN SGF
Sbjct: 164 YLFEVKNLSISFHFES--PQQVEPCQPVNPFKENPQKSGF 201
>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 15 NEMLKIDVENNEVPPPIVYEKQEVNENKLDWF 110
+ +LK ++NN P I+ K ++ + KLD+F
Sbjct: 218 SRILKDSIKNNWPEPKIIRCKIDIKDLKLDFF 249
>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
sulfurtransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 298
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 12 KNEMLKIDVENNEVPPPIVYEKQEVNENKLDWFN 113
K E L+++ P P+VYE ++N++ + F+
Sbjct: 133 KTEGLELETGEPRTPKPVVYEGAKLNKDLVASFD 166
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.0 bits (52), Expect = 9.6
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +3
Query: 147 IQNEIANIDFKETKWNPDAPEFSLNEGTTIQASTQDGINDVFLSETDN 290
I E A ID ++ NP APEF + ST +D SETDN
Sbjct: 1325 ISEEQAKIDKQKVALNPSAPEF-------VPDSTP---SDAVASETDN 1362
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.0 bits (52), Expect = 9.6
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Frame = +3
Query: 105 WFNVTDDGAACMEDIQN-EIANIDFKETKWNPDAPEFSLNEGTTIQASTQDGINDVFLSE 281
W AC++D ++ E + + T + D + NEGT ND F
Sbjct: 241 WAYANIISTACVKDDESCEKIRLTLENTNIDEDITQMIQNEGTGTTIPPLPEFNDYFKEN 300
Query: 282 TDNTDTNKYIT 314
N D ++ I+
Sbjct: 301 GLNYDIDQLIS 311
>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 168 IDFKETKWNPDAPEFSLNEGTTIQA 242
+ K+ KW D F+ N GTT+ A
Sbjct: 220 LSLKDGKWVLDKARFTYNTGTTMTA 244
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,138
Number of Sequences: 5004
Number of extensions: 56724
Number of successful extensions: 163
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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