Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6j13
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0412 - 18749430-18749587,18749696-18749857,18750062-187501... 52 4e-07
05_03_0186 + 9365179-9365342,9367332-9367403,9368362-9368433,936... 30 1.9
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 30 1.9
12_02_1262 + 27415191-27415279,27415367-27415565,27415635-274157... 29 4.3
05_06_0084 - 25435650-25436600 28 5.7
12_02_0406 - 18648414-18648809,18650049-18650180,18650959-186510... 28 7.5
07_03_0356 - 17142019-17142899,17145251-17145290,17145381-171455... 28 7.5
07_01_0450 - 3395644-3395837,3396164-3396190,3396266-3396396,339... 28 7.5
12_01_0686 - 5855216-5858263 27 9.9
10_08_0795 + 20635038-20635501,20636034-20636335,20636409-20637010 27 9.9
>02_03_0412 -
18749430-18749587,18749696-18749857,18750062-18750194,
18751640-18751744,18751818-18751935,18752232-18752320,
18752407-18753660,18753785-18753831,18754285-18754339,
18754783-18754884
Length = 740
Score = 52.0 bits (119), Expect = 4e-07
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Frame = +3
Query: 261 NDVFLSETDNTDTNKYITDIDKQNQAKYFYFYQAEDGQQVFLNSLNVRILNESWGALAAA 440
N +F + + + ID N+ + FYQ DGQ + L+ LN++ L +G+
Sbjct: 455 NKIFNKGMPSKTEERCMAPIDS-NENDTYNFYQVSDGQHLILHPLNMKCLINHYGSSDML 513
Query: 441 PTT-----ITGRVLHRETLPLTEQTRKHMPYTAHLPLYCSVDIVELELQPPYVTANALEN 605
P + I G++L ET+ +E TRK Y +H L + E++L + ++L
Sbjct: 514 PPSLLARRIHGKILELETVTQSEATRKRYRYLSHFSLTTTFQFCEIDL-GDMLPPSSLAP 572
Query: 606 FTEEL 620
F +E+
Sbjct: 573 FMDEI 577
>05_03_0186 +
9365179-9365342,9367332-9367403,9368362-9368433,
9368719-9368790,9368889-9368954,9369043-9369114,
9369716-9369790,9370059-9370124,9370360-9370404,
9370713-9371064,9371147-9371393,9371418-9371576,
9371659-9371807,9371878-9372088,9372242-9372473,
9372557-9372707,9373147-9373494
Length = 850
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 243 STQDGINDVFLSETDNT-DTNKYITDIDKQNQAKYFYFYQAEDGQQVFLNS 392
ST+ N ++ ++ N D + Y+TD + + YFYQA D + +S
Sbjct: 238 STRGSDNTIYEADATNLGDASYYVTDQIRWGVSNVGYFYQATDRMDIIYSS 288
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Frame = +3
Query: 45 NEVPPPIVYEKQEVNENKLDWFNVTDDGAACMEDIQNEIANIDFKETKWNPDAPEFSLNE 224
N +P ++N+N+ + T++ A +++I E ++ ET + +LNE
Sbjct: 2311 NPLPEHETENASDINQNR-QYQEATNEDA--IDNI--ETGRVEKMETSYTATTEVVTLNE 2365
Query: 225 GTTIQASTQDGI--NDVFLSETDNTDTNKYITDIDKQN 332
+AS DG+ + + DN D + +T+ + +N
Sbjct: 2366 DICDKASGADGVPPDGSLKTSEDNLDVSSVVTESEGEN 2403
>12_02_1262 +
27415191-27415279,27415367-27415565,27415635-27415775,
27415939-27416003,27416111-27416489,27416688-27417149,
27417226-27417546,27418184-27418501
Length = 657
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 249 QDGINDVFLSETDNTDTNKYI 311
+DGI+ + SETDN D NK I
Sbjct: 253 KDGISSITSSETDNDDVNKSI 273
>05_06_0084 - 25435650-25436600
Length = 316
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 164 CYFILNIFHTSSSIVSNIKPIKFVFINLLLFIHNRRR 54
CY LN IV + + F +INL L + RRR
Sbjct: 276 CYLALNADEHHDCIVKVFRQVWFEYINLHLHLSRRRR 312
>12_02_0406 -
18648414-18648809,18650049-18650180,18650959-18651065,
18652979-18653183
Length = 279
Score = 27.9 bits (59), Expect = 7.5
Identities = 24/81 (29%), Positives = 35/81 (43%)
Frame = -1
Query: 601 SSAFAVTYGGCSSNSTISTEQ*RGKCAVYGMCFLVCSVRGNVSRCRTLPVMVVGAAASAP 422
+S F VT+G C S+ T G C + G + + N+ R P + GA AP
Sbjct: 141 TSLFGVTWGQCDLGSSDWTYGRAGPCDLGGPRLVGQAAHCNI-RLPQRPALPAGAWKRAP 199
Query: 421 QDSFRIRTFKLFKNTCCPSSA 359
S R+ T F P++A
Sbjct: 200 ATS-RLSTQPPFHGLTRPAAA 219
>07_03_0356 -
17142019-17142899,17145251-17145290,17145381-17145512,
17145762-17145815,17145913-17145993,17146860-17146955,
17147439-17147611,17147750-17147823,17148515-17148622,
17148693-17148868,17149305-17149352,17150665-17150775,
17152172-17152226,17153434-17153534,17154176-17154290,
17155505-17155698
Length = 812
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 537 YCSVDIVELELQPPYVTANALENFTEELY 623
YCS D+ L+P V+ + L F +E+Y
Sbjct: 272 YCSQDVAIKVLKPERVSVDMLREFAQEVY 300
>07_01_0450 -
3395644-3395837,3396164-3396190,3396266-3396396,
3396612-3396691,3397283-3397345,3397588-3397697,
3398316-3398424,3398783-3398857,3399363-3399459,
3399622-3399683,3399966-3400026,3400330-3400469,
3400747-3400839,3401345-3401393,3401534-3401634,
3401723-3401816,3401904-3402139
Length = 573
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 443 YNHHWKGSTP*DIAPDGTDKKTHAIYSAFASLLLSRYSGVRTTTSVCDS 589
Y+HH TP + +HA AF S L + + TT ++CDS
Sbjct: 32 YHHHSHSQTP------PSSSSSHARLPAFLSFLAAAAAAGGTTVALCDS 74
>12_01_0686 - 5855216-5858263
Length = 1015
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/72 (22%), Positives = 34/72 (47%)
Frame = +3
Query: 42 NNEVPPPIVYEKQEVNENKLDWFNVTDDGAACMEDIQNEIANIDFKETKWNPDAPEFSLN 221
+ ++PP I + L + N++ +C+ + E+ + KE K + P+ S+
Sbjct: 641 SGDIPPSICTAATNLQLFDLSYNNLSGSIPSCLMEDAIELQVLSLKENKLVGNLPD-SIK 699
Query: 222 EGTTIQASTQDG 257
EG +++A G
Sbjct: 700 EGCSLEAIDLSG 711
>10_08_0795 + 20635038-20635501,20636034-20636335,20636409-20637010
Length = 455
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 228 TTIQASTQDGINDVFLSETDNTDTNKYITDIDKQNQA 338
TT +A + I+D +E +TD T+I +QNQA
Sbjct: 419 TTPRAQIEGTIHDNSYAEVQSTDKKNCKTEITEQNQA 455
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,184,603
Number of Sequences: 37544
Number of extensions: 332370
Number of successful extensions: 868
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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