Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6j08
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36753-6|CAA85335.1|  103|Caenorhabditis elegans Hypothetical pr...    42   4e-04
AF292050-1|AAG41146.1|  103|Caenorhabditis elegans 2I146 protein.      42   4e-04
Z19157-3|CAA79566.3|  395|Caenorhabditis elegans Hypothetical pr...    36   0.027
Z81067-2|CAB02977.1|  274|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AF100307-12|AAC68928.1|  338|Caenorhabditis elegans Hypothetical...    28   7.0  

>Z36753-6|CAA85335.1|  103|Caenorhabditis elegans Hypothetical
           protein T09A5.7 protein.
          Length = 103

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
 Frame = +3

Query: 186 MNSIGEECTDLKKKYDDCFNTWFSERFL----KGDQDDSVCAGIFKIYQECVKNAMKQQ- 350
           M+SI  EC  LK+ YD CF T F ++F+    +     + C  +  +Y+ CV+  +  Q 
Sbjct: 6   MSSIFPECDHLKQIYDKCF-TEFFQKFITPNYRHQYAVNPCERLHDVYKRCVEERLATQR 64

Query: 351 --SIDFKEIDKDILXTENE 401
              ID  EI K+ L T+++
Sbjct: 65  PFEIDLDEIRKEYLNTDDD 83


>AF292050-1|AAG41146.1|  103|Caenorhabditis elegans 2I146 protein.
          Length = 103

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
 Frame = +3

Query: 186 MNSIGEECTDLKKKYDDCFNTWFSERFL----KGDQDDSVCAGIFKIYQECVKNAMKQQ- 350
           M+SI  EC  LK+ YD CF T F ++F+    +     + C  +  +Y+ CV+  +  Q 
Sbjct: 6   MSSIFPECDHLKQIYDKCF-TEFFQKFITPNYRHQYAVNPCERLHDVYKRCVEERLATQR 64

Query: 351 --SIDFKEIDKDILXTENE 401
              ID  EI K+ L T+++
Sbjct: 65  PFEIDLDEIRKEYLNTDDD 83


>Z19157-3|CAA79566.3|  395|Caenorhabditis elegans Hypothetical
           protein ZC84.4 protein.
          Length = 395

 Score = 35.9 bits (79), Expect = 0.027
 Identities = 20/77 (25%), Positives = 37/77 (48%)
 Frame = -2

Query: 480 YCNRLWV*RHRPIWVVSYYLHLVVFCIHFQCXRYPYLFL*NQCFAVSLHS*HILDKF*IF 301
           + NR+W+   + I ++SY++HL+ +     C  YP +F        S H+  + D+   F
Sbjct: 275 FANRIWIMEKKSIIIISYFIHLLPY---ISCVAYPLIFTLLNRGIRSAHAKIVADQRRRF 331

Query: 300 QRKQNHLDRLLRTFPRT 250
           +   +     +RT  RT
Sbjct: 332 RSLTDEASSQIRTAIRT 348


>Z81067-2|CAB02977.1|  274|Caenorhabditis elegans Hypothetical
           protein F23A7.3 protein.
          Length = 274

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 551 LFHCKPIITEILVTAWNLKKLAKDIATGCGFKDTDQF 441
           L+  K  +TE+ ++  NL+   + + T C  KDT  F
Sbjct: 153 LYETKRELTEVRISLMNLEAEHRTLQTNCNRKDTQLF 189


>AF100307-12|AAC68928.1|  338|Caenorhabditis elegans Hypothetical
           protein T12B5.2 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 444 IWVVSYYLHLVVFCIHFQC 388
           IWV ++   ++V+C HF+C
Sbjct: 232 IWVSNFDSAIIVYCFHFKC 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,779,713
Number of Sequences: 27780
Number of extensions: 307502
Number of successful extensions: 706
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)