Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6i24
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    30   0.24 
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     27   1.7  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    27   3.0  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    26   3.9  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    26   5.2  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   6.9  

>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +1

Query: 172 LSIGGESSTPGAVATLESIGNLGPS--QNKVIAKEISDFVEKELGISKDRFFLTFYDLKN 345
           L +G +   P   +TLE I   GP       IA+ +  FV+++ GI      LT  D+ N
Sbjct: 262 LHVGEKFYRPALASTLEEIAKFGPEVFYTGKIAERLVKFVQQQGGI------LTMEDMAN 315

Query: 346 FNV 354
           F+V
Sbjct: 316 FSV 318


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 484 FQNELHT*PQYSKAKDTKINVYAYKKILTLFLVIFIHAS 600
           +  +LH  P+YS+ KD K ++      ++LF  IFI+ +
Sbjct: 768 YTEQLH--PEYSRKKDAKFHLSLSHIRISLFFYIFINVA 804


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 426 ICDKHIFLICTSRFQYIDGDSSFS 355
           +C  H+F IC S    + GDS FS
Sbjct: 125 LCSAHVFSICKSPISQV-GDSGFS 147


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 167 VPYR*EASRPHQALSPPW-NRLVTWAQAKIKSSPKKYQISSKRNWES 304
           +P+  +A +P+  ++  W N   TW   + +S P  +  S+  +W S
Sbjct: 294 IPFM-QAHKPNSDVAVFWSNAAATWIDVEKESGPSPHSQSTSTHWYS 339


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 224 DSRVATAPGVDDSPPIDKAQSGDIRH 147
           D  VA AP   D+P  D A    +RH
Sbjct: 47  DEEVAAAPSSQDTPYFDYAYERSLRH 72


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 398 HIKNICLSHM-AHRYKILSINRNLNIIQNYSKMNYIPDHN 514
           H + + L+H   H++K ++ N   N+ + YS+ N+I  H+
Sbjct: 118 HQQQLHLNHQYQHQHKNVAANSIDNLSRQYSQPNHINTHD 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,676,478
Number of Sequences: 5004
Number of extensions: 58126
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)