Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6i24
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1272 - 28887034-28887069,28887282-28887482,28887599-28887709 61 6e-10
12_01_0047 + 410349-410459,411289-411489,412251-412454 58 4e-09
11_01_0045 + 346817-347168,347582-347713,347790-347968,348654-34... 58 4e-09
02_01_0345 + 2484073-2485152 29 2.3
01_05_0624 + 23772613-23774671,23774737-23775596 29 2.3
03_02_0010 + 4903473-4903525,4904117-4904175,4904285-4904355,490... 29 3.1
12_02_0019 - 12366259-12366819,12367653-12367685,12368294-123683... 29 4.1
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578... 29 4.1
12_01_0505 - 4005211-4005234,4005235-4005432,4005522-4006006,400... 28 7.1
10_08_0259 + 16274430-16274747,16275180-16275242,16275329-162754... 28 7.1
10_02_0085 - 5093036-5094285,5094737-5095255,5098698-5099373 28 7.1
07_03_1269 - 25339970-25340086,25340357-25340416,25341494-253415... 28 7.1
06_03_1367 + 29607008-29607501,29608726-29608906,29609006-296090... 27 9.4
>06_03_1272 - 28887034-28887069,28887282-28887482,28887599-28887709
Length = 115
Score = 61.3 bits (142), Expect = 6e-10
Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Frame = +1
Query: 31 MPCLKIFTNL-TNSFIPNDFVNKIIPVLSKAVQKSPEKFICL-ISPDCALSIGGESSTPG 204
MP L + TN+ ++ + D + L++ + K PE ++ + IS +S S P
Sbjct: 1 MPQLSLTTNVPVDAVVAADIIKDCSKALARIIGK-PESYVMVSISGSVPMSFAA-SEEPA 58
Query: 205 AVATLESIGNLGPSQNKVIAKEISDFVEKELGISKDRFFLTFYDLKNFNVAKGGIT 372
A L SIG +GP N ++ +++ +E +L +S+ RF++ F D+K FN+ G T
Sbjct: 59 AYGELMSIGGIGPGVNGKLSAALAEILETKLSVSRSRFYVKFDDVKGFNLGFNGST 114
>12_01_0047 + 410349-410459,411289-411489,412251-412454
Length = 171
Score = 58.4 bits (135), Expect = 4e-09
Identities = 32/104 (30%), Positives = 47/104 (45%)
Frame = +1
Query: 31 MPCLKIFTNLTNSFIPNDFVNKIIPVLSKAVQKSPEKFICLISPDCALSIGGESSTPGAV 210
MPCL + TN+ + V + PE ++ ++ G + P A
Sbjct: 1 MPCLNVSTNVNLDGVDTSAVLADASKTVATIIGKPEAYVMVVLKGSVPMAFGGTQEPAAY 60
Query: 211 ATLESIGNLGPSQNKVIAKEISDFVEKELGISKDRFFLTFYDLK 342
L SIG L P NK ++ I+ +E +L I K RF+L FYD K
Sbjct: 61 GELVSIGGLNPDVNKKLSAGIASILESKLSIPKGRFYLKFYDSK 104
>11_01_0045 +
346817-347168,347582-347713,347790-347968,348654-348789,
348974-349070,349206-349306,349618-349781,349867-349938,
350034-350150,350235-350369,350421-350532,351197-351513,
353065-353265,353467-353544
Length = 730
Score = 58.4 bits (135), Expect = 4e-09
Identities = 32/104 (30%), Positives = 47/104 (45%)
Frame = +1
Query: 31 MPCLKIFTNLTNSFIPNDFVNKIIPVLSKAVQKSPEKFICLISPDCALSIGGESSTPGAV 210
MPCL + TN+ + V + PE ++ ++ G + P A
Sbjct: 602 MPCLNVSTNVNLDGVDTSAVLADASKTVATIIGKPEAYVMVVLKGSVPMAFGGTQEPAAY 661
Query: 211 ATLESIGNLGPSQNKVIAKEISDFVEKELGISKDRFFLTFYDLK 342
L SIG L P NK ++ I+ +E +L I K RF+L FYD K
Sbjct: 662 GELVSIGGLNPDVNKKLSAGIASILESKLSIPKGRFYLKFYDSK 705
>02_01_0345 + 2484073-2485152
Length = 359
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -3
Query: 254 LFWLGPRLPIDSRVATAPGVDDSP--PIDKAQSGDIRHINFSGDFCTALDRT 105
LF+ LP+ ++A V+D+P PID G + S D ++DRT
Sbjct: 31 LFYPNDALPVPQSSSSATVVEDAPLPPIDMTFCGSTEFMRRSDDKIVSVDRT 82
>01_05_0624 + 23772613-23774671,23774737-23775596
Length = 972
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 356 LKEESPSMYWNLEVHIKNICLSHMAHRYKI 445
+K+E P+ +WNL + N+ +SH R K+
Sbjct: 500 IKDELPNWFWNLVSDVANVNISHNQIRGKL 529
>03_02_0010 +
4903473-4903525,4904117-4904175,4904285-4904355,
4904469-4904585,4907001-4907024,4907055-4907117,
4907303-4907407,4907552-4907602,4907702-4908535
Length = 458
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 205 AVATLESIGNLGPSQ-NKVIAKEISDFVEKELGISKDRFFLT 327
A++T E GP Q +K + KEI+D V ++GI + F++
Sbjct: 112 ALSTPEGYQGYGPEQGHKNLRKEIADKVYPDMGIKESEVFIS 153
>12_02_0019 -
12366259-12366819,12367653-12367685,12368294-12368363,
12368582-12368712,12369627-12369673,12369803-12369879,
12369963-12370027,12370105-12370191,12370300-12370389,
12370972-12371037,12371608-12371664,12371749-12371850,
12373018-12373554
Length = 640
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 239 PRLPIDSRVATAPGVDDSPPIDKAQSGD 156
P P+DS+ +TAP V P+ +A S D
Sbjct: 15 PATPVDSQDSTAPPVRTPDPVSQATSND 42
>12_02_0017 -
12357029-12357070,12357434-12357503,12357722-12357852,
12358836-12358882,12359762-12360044,12360547-12362413,
12362454-12362665
Length = 883
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 239 PRLPIDSRVATAPGVDDSPPIDKAQSGD 156
P P+DS+ +TAP V P+ +A S D
Sbjct: 704 PATPVDSQDSTAPPVRTPDPVSQATSND 731
>12_01_0505 -
4005211-4005234,4005235-4005432,4005522-4006006,
4006533-4006700,4007128-4007203,4007327-4007409,
4007511-4007589,4007685-4007753,4008174-4008266,
4008668-4008713,4009398-4009522
Length = 481
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 265 KEISDFVEKELGISKDRFFLTFYDLKNFNVAKGGITV 375
K++S +EK + +S++ F+LT+ + F + G + V
Sbjct: 223 KQLSQMIEKRISLSRESFYLTYLG-QTFRMVDGCMEV 258
>10_08_0259 +
16274430-16274747,16275180-16275242,16275329-16275424,
16275526-16275618,16276415-16276605,16276684-16276921,
16277805-16277900,16278324-16278404,16278532-16278939,
16279048-16279331,16279460-16279547,16279630-16279830,
16280032-16280118,16280119-16280238,16280536-16280708,
16281914-16282055,16282292-16282414,16282601-16282656,
16282735-16283038,16283154-16283283,16283491-16283549,
16283829-16284061,16285480-16285527,16285765-16285843,
16285925-16286169,16286338-16286722
Length = 1446
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 287 KRNWESRKTDFS*H-STI*RTLM*LKEESPSMYWNLEVHIKNIC 415
K+ WES D H + + L E PS+Y ++E + N+C
Sbjct: 172 KKEWESELDDLETHIAVLLEQLDAAGVELPSLYKSIESQVPNVC 215
>10_02_0085 - 5093036-5094285,5094737-5095255,5098698-5099373
Length = 814
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -3
Query: 221 SRVATAPGVD--DSPPIDKAQSGDIRHINFSGDFCTAL 114
S + T P +D D P +DKA DIR + + C L
Sbjct: 693 SEIKTRPIIDLVDPPVLDKANEEDIRQVASLAEMCIKL 730
>07_03_1269 -
25339970-25340086,25340357-25340416,25341494-25341574,
25341647-25341801,25341894-25341978,25342106-25342174,
25342410-25342489,25342620-25342665,25342743-25342838,
25342921-25343031,25343141-25343344,25343430-25343632,
25344495-25344711
Length = 507
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 323 KKNLSFEIPNSFSTKSDISLAMTLFWLGPRLPIDSRVATA 204
KK F +P + + LAM L W+GP I + AT+
Sbjct: 222 KKMNPFCVPFATTNMGSAILAMDLGWMGPNYSISTACATS 261
>06_03_1367 +
29607008-29607501,29608726-29608906,29609006-29609065,
29609486-29609649,29609723-29609888,29609889-29609957,
29610060-29610155,29610345-29610389,29610765-29610835,
29610996-29611062,29611150-29611200,29611276-29611686
Length = 624
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 235 GYQSIPGWRQRLVWTTRL 182
G +P WR+RL+W TR+
Sbjct: 138 GAGPMPAWRRRLMWITRI 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,203,779
Number of Sequences: 37544
Number of extensions: 335327
Number of successful extensions: 828
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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