Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6i22
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...   177   9e-46
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    27   2.5  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    27   3.3  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   4.3  
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po...    26   4.3  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    26   5.7  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    26   5.7  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   7.5  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    25   7.5  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   7.5  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score =  177 bits (432), Expect = 9e-46
 Identities = 91/152 (59%), Positives = 108/152 (71%), Gaps = 3/152 (1%)
 Frame = +1

Query: 136 KAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGL-TKGKHGFHVHEFGDNTNGCTSAG 306
           +AV VLRGD  VSG V F+Q D+ S V V  ++ G     K GFH+H+FGDNTNGCTSAG
Sbjct: 3   RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAG 62

Query: 307 AHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVH 486
            HFNPE + HG  ++AVRHVGDLGN+E+ +  G  K +  DS ISL G NSIIGRT+V+H
Sbjct: 63  PHFNPEGKTHGDRTAAVRHVGDLGNLES-DAQGNIKTTFSDSVISLFGANSIIGRTIVIH 121

Query: 487 ADPDDLGLGGHELSKTTGNAGGRIACGVIGLA 582
           A  DDLG G  E S  TGNAG R ACGVIG+A
Sbjct: 122 AGEDDLGKGTSEESLKTGNAGARNACGVIGIA 153


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 22/86 (25%), Positives = 39/86 (45%)
 Frame = +1

Query: 370 DLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAG 549
           D+ NI+  ++  + ++++   Q++    N  + R +    +   L L  H L+   G AG
Sbjct: 431 DIINIDIEKEKTIEEIAMGFIQVA----NETMCRPIRKLTESRGLDLSAHHLA-VFGGAG 485

Query: 550 GRIACGVIGLAKI*NTYIFHMLGLVL 627
           G+ AC +  L  I    I H    VL
Sbjct: 486 GQHACAIASLLNI-EKIIIHKYSSVL 510


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 563 VESLAWPRFKIHTFFICWAWYYN 631
           VE L W  F  +     W WYYN
Sbjct: 523 VEGLQWVLFYYYRGCQSWGWYYN 545


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
 Frame = +2

Query: 176 FSSISRMKSHLLLFLERSRA*LRVNTVSMCTNLVTTQTVAHQLELISTLKNKIMVVPVLL 355
           FSS+S  +     F   S +    N  S  +   TT   ++    + T  + I+  P++ 
Sbjct: 508 FSSLSSSQLSTENFTSASSSLSLTNAKSSLSTPSTTIPTSNSSVSLQTSSSLIISSPIIS 567

Query: 356 YAMSATSVTLRQLK---TLESLKYQSKIPRSLFMDLTASLVAL 475
            +++ATS +   L    T  +  Y S +  S   D ++SL+ +
Sbjct: 568 SSLTATSTSTPALTHSITPSNTSYTSSLIPSSSTDYSSSLITV 610


>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 213

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -1

Query: 294 ATVCVVTKFVHMETVFTLSQ-ALDLSRNNNR*LFILLIEENSSANIT 157
           A +C+  + VH++ V +LS+    +S N N+ L +LLI   S+   T
Sbjct: 144 AGLCIGDELVHVQNVTSLSELPTFISNNVNKTLDVLLIRGYSADGST 190


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 352 AVRHVGDLGNIEAIEDSGVTKVSIQDSQ 435
           A R   DL NI  +ED  V+  S+ DS+
Sbjct: 231 AKRERDDLKNIMQLEDESVSTTSVHDSE 258


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 314 STLKNKIMVVPVLLYAMSATSVTLRQLKTLESLK 415
           STLK + +  PV L A+    ++LR L   ESL+
Sbjct: 326 STLKRRHVRAPVSLDAVDGIELSLRDLNDEESLQ 359


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 293  QPFVLSPNSCTWKPCLPLVKPWTSPETT 210
            +PF L+P + +     P +KPW  P  T
Sbjct: 1190 RPFNLTPFAISLNALTPQLKPWLPPTDT 1217


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 482 TTKVRPMMLLGP*REIWESWIDTLVTP 402
           +T + P  LL    E+WE   DT +TP
Sbjct: 78  STLIEPNYLLTAWHELWEELQDTYMTP 104


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +2

Query: 308  LISTLKNKIMVVPVLLYAMSATSVTLRQLKTLES-LKYQSKIPRSLFM 448
            L++T  +  + +PVLLY +   ++ +  L++ ES  + + KI  +L M
Sbjct: 1130 LLNTASHTAVKLPVLLYILDTLNLVITHLQSEESESQLREKILANLVM 1177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,098
Number of Sequences: 5004
Number of extensions: 58745
Number of successful extensions: 157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)