Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6i19
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch...    90   1e-19
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc...    60   1e-10
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...    49   3e-07
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces...    39   4e-04
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    39   4e-04
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch...    33   0.014
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    32   0.032
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy...    30   0.17 
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    29   0.39 
SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofacto...    27   1.6  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    24   8.4  
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         24   8.4  

>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 94

 Score = 90.2 bits (214), Expect = 1e-19
 Identities = 39/92 (42%), Positives = 64/92 (69%)
 Frame = +3

Query: 105 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 284
           L +++ Q V VIT+DGR  +G+LKGFD T N+IL +S ER+ S    +  + LG++++RG
Sbjct: 3   LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRG 62

Query: 285 DNVAIVGQIDESIDSRLDLGNIKAEPLGPMVH 380
           +NVA+VG ++E +DS ++   I+ E +  +VH
Sbjct: 63  ENVAMVGLVNEELDSEIEWTKIRGEAIPDVVH 94


>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 140

 Score = 60.5 bits (140), Expect = 1e-10
 Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
 Frame = +3

Query: 96  ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHI 275
           +  L +YV++ V V+  DG+  IG L+ FDQ  N++L  + ER++        +  G++I
Sbjct: 13  SGSLVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDM-YGDIDRGVYI 71

Query: 276 IRGDNVAIVGQ--IDESIDSRLDLGNIKAEPLGPM 374
           +RG+NV ++G+  +D+  D+   L  + AE L P+
Sbjct: 72  VRGENVVLLGELDLDKEYDAVKQLRRMPAEELYPL 106


>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 48.8 bits (111), Expect = 3e-07
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
 Frame = +3

Query: 105 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGV---AQVVLGLHI 275
           L  Y +Q +    + GR   G LKGFDQ +N++LD+  E++ +   G    A   LGL +
Sbjct: 28  LSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVV 87

Query: 276 IRGDNVAIVGQIDES 320
           +RG  + ++  +D S
Sbjct: 88  VRGTTLVLIAPMDGS 102


>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 77

 Score = 38.7 bits (86), Expect = 4e-04
 Identities = 22/74 (29%), Positives = 41/74 (55%)
 Frame = +3

Query: 96  ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHI 275
           A  L+ Y+++ V V  +  R   G L+G+D  +NI+L++S E          +V +G   
Sbjct: 6   APDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDG----EKVKIGSVA 61

Query: 276 IRGDNVAIVGQIDE 317
           IRG++V ++  +D+
Sbjct: 62  IRGNSVIMIETLDK 75


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 38.7 bits (86), Expect = 4e-04
 Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 12/96 (12%)
 Frame = +3

Query: 117 VNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE-------RVFSSTSGVAQVVLGLHI 275
           +N +++V T DGR F+G L  FD  +N++L +  E        V S++    + +LGL I
Sbjct: 10  LNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKRMLGLVI 69

Query: 276 IRGD---NVAIVG--QIDESIDSRLDLGNIKAEPLG 368
           +RG+   ++++ G   +D S+   L  G   A P G
Sbjct: 70  LRGEFIVSLSVQGPPPMDPSMRGSLLSGPGVARPAG 105


>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
           Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 80

 Score = 33.5 bits (73), Expect = 0.014
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +3

Query: 105 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQ 254
           ++  +   + VI    R F GTL GFD  +NI+L +  E  + + +GV +
Sbjct: 11  IDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTE--YDTVTGVTE 58


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 32.3 bits (70), Expect = 0.032
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = +3

Query: 180 FDQTINIILDESHERVFSSTSGVAQVVLGLHIIR--GDNVAIVGQIDESIDSRLDLGNI 350
           FD T+    D   +R F+S S +  V+LGLH ++  G N  I+G I   + S++ L +I
Sbjct: 823 FDSTLASSSDNDEQRDFASNSSI--VLLGLHYLKYFGSNKYILGSILLVMMSQVSLASI 879


>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 84

 Score = 29.9 bits (64), Expect = 0.17
 Identities = 15/49 (30%), Positives = 32/49 (65%)
 Frame = +3

Query: 165 GTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQI 311
           G ++GFD+ +NI+LD++  +V +  +   +  LG  +++GDN+ ++  I
Sbjct: 40  GQIRGFDEFMNIVLDDA-VQVDAKNN---KRELGRILLKGDNITLIQAI 84


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 28.7 bits (61), Expect = 0.39
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = -2

Query: 340 RSNLLSIDSSICPT----IATLSPLIM*SPSTT*ATPLVEENTLS*DSSKIIFIVWSKPL 173
           +SN+L +D +I PT    I TL P  + SP       LV   TL+ D SKI  +    P 
Sbjct: 322 KSNILDLDQNISPTFLPDIDTLLPYRLPSP----LQKLVFSATLTRDPSKIASLKLHNPR 377

Query: 172 RVPIKLRPSEV 140
            V ++ +  EV
Sbjct: 378 LVLVQNKDMEV 388


>SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofactor
           B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 297 IVGQIDESIDSRLDLGNIKAEPLGPMV 377
           + G +  S +  LDLG  K +PLG +V
Sbjct: 54  VPGHVFTSEEENLDLGEFKLQPLGTIV 80


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 334 NLLSIDSSICPTIATLSPLI 275
           NLLS+D+SIC  I   + L+
Sbjct: 225 NLLSVDNSICSIIVENTTLV 244


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -1

Query: 137 YRHCLIHV--IFESRSHSNYFIYKFKLVII 54
           + +C++ V   FE  SHS  F+Y F  +II
Sbjct: 42  FANCVVDVKYYFEGFSHSLLFVYFFLTLII 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,610,551
Number of Sequences: 5004
Number of extensions: 30282
Number of successful extensions: 99
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)