Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6i19
         (419 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like ...   120   3e-28
Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical pr...    53   7e-08
Z92773-2|CAB07132.1|  160|Caenorhabditis elegans Hypothetical pr...    46   8e-06
Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical pr...    40   7e-04
AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G ...    40   7e-04
AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear...    40   7e-04
Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical pr...    33   0.11 
Z98866-12|CAB11551.1|   90|Caenorhabditis elegans Hypothetical p...    32   0.14 
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    27   4.1  
Z82075-2|CAB60333.1|  328|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z81030-14|CAJ43441.1|   75|Caenorhabditis elegans Hypothetical p...    27   5.5  
U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AC024796-8|AAK29897.2|  103|Caenorhabditis elegans Hypothetical ...    27   7.2  
U80032-1|AAB53879.2|  568|Caenorhabditis elegans Phosphodiestera...    26   9.5  

>AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like
           protein protein 8 protein.
          Length = 98

 Score =  120 bits (290), Expect = 3e-28
 Identities = 52/94 (55%), Positives = 73/94 (77%)
 Frame = +3

Query: 93  MASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLH 272
           M S L+ Y+N+ V+V+T DGR  +G LKGFDQ IN++++++HER +S T GV    LGL+
Sbjct: 1   MTSTLDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLY 60

Query: 273 IIRGDNVAIVGQIDESIDSRLDLGNIKAEPLGPM 374
           IIRG+NVAI+G+IDE +D R+DL N+KA PL P+
Sbjct: 61  IIRGENVAIIGEIDEELDKRVDLENVKAAPLAPI 94


>Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical
           protein F40F8.9 protein.
          Length = 125

 Score = 53.2 bits (122), Expect = 7e-08
 Identities = 28/80 (35%), Positives = 46/80 (57%)
 Frame = +3

Query: 96  ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHI 275
           A  L   +++ + V+  DGR  IG L+  DQ  N+IL++  ER F       +   G  +
Sbjct: 11  AISLFEQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVE-KYFCETGQGFML 69

Query: 276 IRGDNVAIVGQIDESIDSRL 335
           IRG+NV + G+ID++I++ L
Sbjct: 70  IRGENVELAGEIDDTIETGL 89


>Z92773-2|CAB07132.1|  160|Caenorhabditis elegans Hypothetical
           protein W08E3.1 protein.
          Length = 160

 Score = 46.4 bits (105), Expect = 8e-06
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
 Frame = +3

Query: 114 YVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE------RVFSSTSGVAQVVLGLHI 275
           ++N  + +I  DGR FIG  K FD+ +NI+L E  E      +    T G  + +LGL +
Sbjct: 12  HLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEKRILGLVL 71

Query: 276 IRGDNV 293
           +RG+++
Sbjct: 72  VRGEHI 77


>Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical
           protein ZK593.7 protein.
          Length = 104

 Score = 39.9 bits (89), Expect = 7e-04
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
 Frame = +3

Query: 105 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFS----STSGVAQVVLGLH 272
           L  ++++ + V    GR   G L+GFDQ +N++LD+  E +      S  G     LGL 
Sbjct: 16  LTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGLI 75

Query: 273 IIRGDNVAIVGQID 314
           + RG  + +V   D
Sbjct: 76  VARGTAITVVSPAD 89


>AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G
           protein.
          Length = 77

 Score = 39.9 bits (89), Expect = 7e-04
 Identities = 21/66 (31%), Positives = 40/66 (60%)
 Frame = +3

Query: 105 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 284
           L+ Y+++ + +  +  R   G L+GFD  +N+++DE+ E  +    G   V LG+ +IRG
Sbjct: 9   LKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVE--YQKDGG--SVNLGMTVIRG 64

Query: 285 DNVAIV 302
           ++V I+
Sbjct: 65  NSVVIM 70


>AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 7 protein.
          Length = 77

 Score = 39.9 bits (89), Expect = 7e-04
 Identities = 21/66 (31%), Positives = 40/66 (60%)
 Frame = +3

Query: 105 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 284
           L+ Y+++ + +  +  R   G L+GFD  +N+++DE+ E  +    G   V LG+ +IRG
Sbjct: 9   LKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVE--YQKDGG--SVNLGMTVIRG 64

Query: 285 DNVAIV 302
           ++V I+
Sbjct: 65  NSVVIM 70


>Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical
           protein F28F8.3 protein.
          Length = 91

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 14/66 (21%), Positives = 35/66 (53%)
 Frame = +3

Query: 105 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 284
           ++  +   + VI  + +  +GTL GFD  +N++L++  E   ++  G     L   ++ G
Sbjct: 18  IDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVE-YENTADGKRMTKLDTILLNG 76

Query: 285 DNVAIV 302
           +++ ++
Sbjct: 77  NHITML 82


>Z98866-12|CAB11551.1|   90|Caenorhabditis elegans Hypothetical
           protein Y49E10.15 protein.
          Length = 90

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 15/46 (32%), Positives = 29/46 (63%)
 Frame = +3

Query: 165 GTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIV 302
           G + GFD+ +N++ DE+ E V   T G  ++  G  +++GDN+ ++
Sbjct: 41  GYIIGFDEFMNVVFDEA-EEVNMKTKGRNKI--GRILLKGDNITLI 83


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
           protein F59E12.9 protein.
          Length = 1621

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 349 MFPRSNLLSIDSSICPTIAT 290
           +FP   LL+ DS +CP I T
Sbjct: 277 LFPEEQLLTCDSEVCPFILT 296


>Z82075-2|CAB60333.1|  328|Caenorhabditis elegans Hypothetical
           protein W07A8.5 protein.
          Length = 328

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 26/90 (28%), Positives = 42/90 (46%)
 Frame = +3

Query: 69  EFINKIIRMASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGV 248
           +FI K I +   L  +V   VSV+ +  R FI  +K  DQ I      S +R+F  + G+
Sbjct: 82  QFIGKEITLVGTLSYFVPMCVSVLMTLNRLFI-VIKPTDQAI-----FSQKRIFVYSFGI 135

Query: 249 AQVVLGLHIIRGDNVAIVGQIDESIDSRLD 338
               L L +I   +   V  +  S++ + D
Sbjct: 136 LIFCLTLLLIPYFSDCSVNFLASSLEFQTD 165


>Z81030-14|CAJ43441.1|   75|Caenorhabditis elegans Hypothetical
           protein C01G10.17 protein.
          Length = 75

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 92  NGFWTRKLRESNSVGNNFGWT*FYWHP*GL*PNNKYYF 205
           + ++T     +N+  NN G+T +Y++P     NN YY+
Sbjct: 18  DAYYTYYYYPNNNYNNNNGYTTYYYYPNN--NNNGYYY 53


>U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical
           protein ZC155.3 protein.
          Length = 845

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +3

Query: 141 TSDGRNFI---GTLKGFDQTINIILDESHERVFSSTSG 245
           +SD +N I    +     + +N+   ESHER+ SST G
Sbjct: 578 SSDSQNSIRSASSCSSSSRLLNVAKIESHERIHSSTGG 615


>AC024796-8|AAK29897.2|  103|Caenorhabditis elegans Hypothetical
           protein Y48G1C.9 protein.
          Length = 103

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 114 YVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHER 224
           Y+ +   +  +DGR   GT+   D+  N++ +++ ER
Sbjct: 30  YIGKRYEIRMTDGRYIRGTMIATDKDANMVFNKADER 66


>U80032-1|AAB53879.2|  568|Caenorhabditis elegans Phosphodiesterase
           protein 5 protein.
          Length = 568

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = +3

Query: 111 NYVNQTVSVITSDGRNFIGTLKGFD--QTINII 203
           ++ NQTV+++  DG N + +L   D  +T+++I
Sbjct: 412 HHFNQTVTILQQDGHNILKSLSSEDYKKTLSLI 444


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,674,579
Number of Sequences: 27780
Number of extensions: 161556
Number of successful extensions: 387
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)