Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6i17
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.09c |mrp21||mitochondrial ribosomal protein subunit Mrp2...    37   0.002
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    28   1.5  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    27   3.4  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.4  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    25   7.9  

>SPBC839.09c |mrp21||mitochondrial ribosomal protein subunit
           Mrp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +1

Query: 145 NDIDNACRLINRIMGKEGLLAQYRLTRYYEKPFQTRRRVNHEKCKAIYNEDMERKIQFVL 324
           N +  A R ++RI  +  +   +R  R+YEKP + R RV  E+ +A +   + R +    
Sbjct: 55  NSLTRAFRQVDRICQRNNVPRLFRSQRFYEKPSEKRSRVRSERHRARFRAGIVRLVNLAK 114

Query: 325 RKNR 336
              R
Sbjct: 115 NMRR 118


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 142 FVQTLCEL*KKDVYLIIGAATDAFYSDWIKKFQTFNS 32
           F+ T C++ + D+ +I       FY +WI K +  N+
Sbjct: 267 FIDTACKVWRVDMTMIAYETNRNFYMEWIHKKRIINT 303


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -2

Query: 341 SCLFFLNTNCIFLSISSL*MALHFSWLTRRLV*NGFS*YLVSLY 210
           +C +  N +  FLS+  +   +++ +L R    NG S + + LY
Sbjct: 51  ACFYIPNMDLAFLSVERIVRDVNYGFLLRAFHANGASFFFIFLY 94


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 13/98 (13%)
 Frame = -3

Query: 532 YLKYL*F--LFWNRSFFFTLS------FLERSFSQCHVFQLLSRSIPIIHMMSGY----- 392
           Y  +L F  +FWN  ++  +       F    + QC    L+ R +  ++++S Y     
Sbjct: 249 YFNWLGFFVVFWNPYWYKMMDNPSWELFGRDQYIQCQALYLIIR-LTCLYLLSCYESEIL 307

Query: 391 NLLFTFDLSFSNILERVHVYFFLIQIVFFSPYLHCRWP 278
           NL    +L    +L ++H  FF + I F    + C  P
Sbjct: 308 NLSSDTNLESDFLLRQIHAAFFFVTICFTWISISCLKP 345


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 448 HVFQLLSRSIPIIHMMSGYNLLFTFDLSFSNILERVHVYFFLIQIVF 308
           H+  LLS + PI+   +    LFTF++     LE +H Y+  I  +F
Sbjct: 182 HIKTLLSDNSPIVVPAA----LFTFEVVCPEKLEIIHPYYHRICTLF 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,991
Number of Sequences: 5004
Number of extensions: 55621
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)