Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6i17
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               24   1.6  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   3.6  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   3.6  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   8.4  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   8.4  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   8.4  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   8.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.4  

>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 181 IMGKEGLLAQYRLTRYYEKPFQTRRRVNHEKCKAIYNED-MERKIQFV 321
           I+ K   +   +  R+  +  Q   +    KCK+I NED  E+  Q V
Sbjct: 68  ILDKNAEVDVQKALRHLPRSMQDSTKKLFNKCKSIQNEDPCEKAYQLV 115


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 548 NYTQTNIENNYXIKKL 595
           NY   N  NNY  KKL
Sbjct: 308 NYNYKNYNNNYNSKKL 323


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 548 NYTQTNIENNYXIKKL 595
           NY   N  NNY  KKL
Sbjct: 319 NYNYKNYNNNYNSKKL 334


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -2

Query: 653 KYKIYNRKSINRYQTDTFSKV-FLCXNYFQ 567
           KY  YN  + N Y  + + K+ +   NY +
Sbjct: 90  KYSNYNNYNNNNYNNNNYKKLQYYNINYIE 119


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -2

Query: 653 KYKIYNRKSINRYQTDTFSKV-FLCXNYFQ 567
           KY  YN  + N Y  + + K+ +   NY +
Sbjct: 90  KYSNYNNYNNNNYNNNNYKKLQYYNINYIE 119


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -2

Query: 653 KYKIYNRKSINRYQTDTFSKV-FLCXNYFQ 567
           KY  YN  + N Y  + + K+ +   NY +
Sbjct: 90  KYSNYNNYNNNNYNNNNYKKLQYYNINYIE 119


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -2

Query: 653 KYKIYNRKSINRYQTDTFSKV-FLCXNYFQ 567
           KY  YN  + N Y  + + K+ +   NY +
Sbjct: 90  KYSNYNNYNNNNYNNNNYKKLQYYNINYIE 119


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 8   DLRFCNTIRIESLEFFYPITVKCI 79
           D+ F   IR  +L +F+ + V C+
Sbjct: 220 DITFVVIIRRRTLYYFFNLIVPCV 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,048
Number of Sequences: 438
Number of extensions: 4308
Number of successful extensions: 23
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)