Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6i15
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    29   0.84 
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    26   4.5  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    26   4.5  
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    26   5.9  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   7.8  

>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = +3

Query: 414 ASSHFDRNVVPYARWVGFAAMVVFCLAAVIFPMGFHVDEIGGQPYQLPNSHQVGISYILF 593
           ++S+   N  P A+ +G      F    V       +D I G   +L +SH     Y++ 
Sbjct: 246 SNSYLRYNRDPIAKLIGLVE-AYFSPDTVDDEFTLAIDAINGS--RLKHSHYKQYHYVVQ 302

Query: 594 VLSLWITVISELFA 635
            L LW+ ++ E+F+
Sbjct: 303 SLHLWLLIMGEIFS 316


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
 Frame = +1

Query: 85  IXXRIF--LVIENYXFISSLYEFYSQKWISEQ*YPPHFSWLLMFLPL*VLQCXI 240
           I  R+F  L +     + S++      W+    Y  HF WL  F     LQC I
Sbjct: 309 IWVRLFARLFLRGSTLVGSVWVLPRSSWVLASFYSLHFLWLCTFFH--ALQCAI 360


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 362 KCQKPFRLKVXSKTNLRSAV*SHARPHKT 276
           K +KPF+ K  SK++L+    +   PH++
Sbjct: 10  KAKKPFKSKHASKSSLKEKYKNEVEPHRS 38


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +1

Query: 457 GLVLQQW-LYSA*RQSYFPWVSTWMRLEDNLINYQTVIKLES 579
           G++   W +    +  Y PW   W+ L  N ++     K ES
Sbjct: 23  GIIRSGWVMLKEDKMKYLPWTKKWLVLSSNSLSIYKGSKSES 64


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 530 DWRTTLSITKQSSSWNLLHIICSLPL 607
           D R  +S  +   SWNL + I +LPL
Sbjct: 330 DTRDLISYIESPISWNLKYFISALPL 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,717,289
Number of Sequences: 5004
Number of extensions: 53841
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)