Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6i14
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    31   0.11 
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    31   0.19 
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    27   2.4  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    27   2.4  
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar...    27   2.4  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    27   2.4  
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...    27   3.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.2  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    26   4.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   5.5  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    26   5.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   7.3  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    25   9.7  
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc...    25   9.7  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    25   9.7  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    25   9.7  

>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 424 YGTKKAWHLTGCILVTATFPLLFIRCWGCWFNENTQ 531
           YG++K   L  C++ T+T PL+ I  +G   +E +Q
Sbjct: 603 YGSEKPLDLKSCVIDTSTAPLIIITSYGVLLSEFSQ 638


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 346 VAGAMLLLGQVVDALATPVVGVLADKYGTKKAWHLTGCILVTATFPLL 489
           V   +L +  V +  A+  +G LADK+ T+K   L G I +T+   LL
Sbjct: 56  VISTLLAVYAVANIAASSPIGFLADKFLTRKVPMLIGLIFLTSATALL 103


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/59 (23%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
 Frame = +1

Query: 196 DSRASYKR--RWWRVSQNVLYGLGHVYNDLCAAMWFSYMLLFFQAVLDMRAVVAGAMLL 366
           ++ +SYK   +WW+ S ++L  +  + + + + +WF + +LFF  ++    +V G+ ++
Sbjct: 190 ETYSSYKLTGQWWQ-STSILLAVS-ILSWIASKLWFRFFILFF--IIITGTIVYGSCMI 244


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
 Frame = +1

Query: 346 VAGAMLLLGQVVDALATPVVGVLADKYGTKKAWHLTGCILVTATFPLLFIRC----WGCW 513
           V  A+++   +V++L+T  +  +   Y T   +HL   +LV     LL  +C     G +
Sbjct: 192 VMAAVIVFHGLVNSLSTRWLDRITRFYAT---FHLI--VLVVCMICLL-AKCPKFNTGKY 245

Query: 514 FNENTQYLYWWMPLYYAVLIIFFQIGWAVVQISHLAMIPSITDNLQVRA 660
              + Q    W P+ ++ L  F  + W +      A I    +N  VRA
Sbjct: 246 VFTDVQASSGWHPIGFSFLFGFLSVAWCMTDYDATAHIAEEIENAAVRA 294


>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 162 DEYCRQNQFIYPSHVVIGHCHY 97
           D++C+  +  YP H V  HCH+
Sbjct: 35  DKFCKTQESTYPIHFV--HCHF 54


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = +1

Query: 343 VVAGAMLLLGQVVDALATPVVGVLADKY----GTKKAWHLTGCILVTATFPLL 489
           ++  A  LLG +  ++  P +  +AD++     T+KA  L+  +LV A  P++
Sbjct: 49  ILVSAFALLGPMASSMVAPCLDQIADRFHIQNSTEKALILSIYLLVFAISPMI 101


>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
           phospholipase C |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 424

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 262 HVYNDLCAAMWFSYMLLFFQAVLDMRAVVAG 354
           HV    C   W   ++LFF  +L + AVV G
Sbjct: 351 HVAIAWCDPAWLKVIILFFTVMLTIAAVVNG 381


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 431 VPYLSAKTPTTGVASASTTCPRSSIAPATTALMSRT 324
           VPY S  TP T    A+T C  S+  P T+  ++ T
Sbjct: 433 VPYTS--TPVTSTPLATTNCTTSTSVPYTSTPVTST 466


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 214 CTMHVNRPATTSEGPGRG*VLPTESVHL 131
           CT+     +TT +GP +G + P ES+ +
Sbjct: 687 CTVEQTATSTTVQGPPKGTLKPLESIDM 714


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 225 VACQSERALRTRACLQRPLRCDVVLIHAAFL 317
           V   S++ L    CL  P+R  V+L H  FL
Sbjct: 808 VTSTSQKELYAELCLTLPIRLSVLLPHMNFL 838


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 372 TSCRCTCNPCCGSFG 416
           TS R  C  CCG+FG
Sbjct: 445 TSVRSVCVSCCGNFG 459


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 419 SAKTPTTGVASASTTCP-RSSIAPATTALMSRTA 321
           S K PT  VAS+S + P  SS+ P ++  +S ++
Sbjct: 455 SVKQPTASVASSSVSVPSSSSVQPQSSTPISSSS 488


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 220 RWWRVSQNVLYGLGHVYNDLCAAMWFSYMLLFFQAVLDMRAVVAGAMLLLG 372
           R W    N+L+GL  +++    ++    +L FF AV +  +  AG   +LG
Sbjct: 97  RLWFSVMNILWGLMTIFSFAVHSVRALMILRFFMAVAE-ASTFAGTHYILG 146


>SPBC947.08c |||histone promoter control protein Hpc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 126 KDR*TDSVGNTHPRPGPSDVVAGRFTCIVQEKMVACQSERALRT 257
           K + T     THP P  S VVA         + +  + E+ LRT
Sbjct: 140 KKKKTSLSNATHPAPAVSAVVASADASFDDSRDIESEDEQPLRT 183


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -3

Query: 503 QHLMNSNGNVAVTKMHPVKC---HAFLVPYLSAKTPTTGVASASTTCPRSSIA 354
           Q  ++S+ +++ T +    C   + FL+ ++ AK  T  V      C R+SIA
Sbjct: 88  QVALHSHSSLSDTVLECYNCGTRNVFLLGFIPAKAKTVVVLLCRQPCARASIA 140


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = -3

Query: 506 PQHLMNSNGNVAVTKMHPVKCHAFLVPYLSAKTPTTGVASASTTCPRSSIAPATTAL 336
           P+H + S+ N +   +HP +      P + +    T   S ++   R    P T AL
Sbjct: 143 PKHDLYSSANASSASLHPTEQRTTSSPTIPSYANRTHTDSPTSLSHRLPNVPDTNAL 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,241
Number of Sequences: 5004
Number of extensions: 61993
Number of successful extensions: 168
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)