Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6i14
(661 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0475 + 3656628-3656791,3656944-3657013,3657114-3657310,365... 100 2e-21
07_03_1019 + 23337543-23337697,23338315-23338384,23338555-233387... 85 5e-17
03_01_0502 - 3779551-3779562,3779863-3780012,3780129-3780172,378... 31 0.61
02_05_0242 + 27121152-27121316,27121404-27121515,27121616-271217... 31 0.61
02_05_1302 + 35567585-35567848,35568303-35568368,35568475-355685... 30 1.4
04_03_0141 + 11767781-11767880,11767953-11769262 30 1.9
04_01_0385 - 5095410-5095445,5095595-5095796,5095905-5095979,509... 29 2.5
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398... 29 4.3
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 29 4.3
04_04_0625 + 26682725-26683066,26683555-26683659,26683790-266839... 28 5.7
01_01_0765 + 5917163-5918212 28 5.7
05_07_0265 + 28783230-28783316,28784381-28785196 28 7.6
>03_01_0475 +
3656628-3656791,3656944-3657013,3657114-3657310,
3657409-3657484,3657794-3657877,3658247-3658326,
3658422-3658548,3658727-3658786,3658874-3658924,
3659013-3659171,3659296-3659428,3659545-3659717
Length = 457
Score = 99.5 bits (237), Expect = 2e-21
Identities = 50/132 (37%), Positives = 74/132 (56%)
Frame = +1
Query: 250 YGLGHVYNDLCAAMWFSYMLLFFQAVLDMRAVVAGAMLLLGQVVDALATPVVGVLADKYG 429
YG+GH+ ND+ +A WF+Y+LLF Q + + A ++L GQV D L T + G + D++G
Sbjct: 25 YGVGHMLNDITSACWFTYLLLFLQEI-GLAPRDAAIVMLSGQVADGLMTILAGEMIDRFG 83
Query: 430 TKKAWHLTGCILVTATFPLLFIRCWGCWFNENTQYLYWWMPLYYAVLIIFFQIGWAVVQI 609
K WH+ G ILV +F +F C C YL + Y+ F IGWA Q+
Sbjct: 84 HFKLWHIGGSILVGISFSSVFGGCLLCTVLGTDSYLV--RTIGYSFFAAVFNIGWAATQV 141
Query: 610 SHLAMIPSITDN 645
SH++M+ +T N
Sbjct: 142 SHMSMVNCMTLN 153
>07_03_1019 +
23337543-23337697,23338315-23338384,23338555-23338740,
23339006-23339080,23339161-23339240,23339357-23339483,
23340608-23340667,23341926-23341976,23342048-23342206,
23342528-23342660,23343097-23343166,23343516-23343570
Length = 406
Score = 85.0 bits (201), Expect = 5e-17
Identities = 43/125 (34%), Positives = 66/125 (52%)
Frame = +1
Query: 250 YGLGHVYNDLCAAMWFSYMLLFFQAVLDMRAVVAGAMLLLGQVVDALATPVVGVLADKYG 429
YG GH+ ND+ ++ WF+Y+L+F + + A ++L GQ+ D AT VG L D++G
Sbjct: 22 YGSGHMLNDITSSCWFTYLLVFLTDI-GLSPSDAAVVMLSGQLADGFATIFVGELIDRFG 80
Query: 430 TKKAWHLTGCILVTATFPLLFIRCWGCWFNENTQYLYWWMPLYYAVLIIFFQIGWAVVQI 609
K WH G ILV +F +F C C + Y+ F +GWAV QI
Sbjct: 81 HFKLWHAGGSILVAISFSSVFGSCLPCKLTGTISST--METVGYSTFAAIFNVGWAVTQI 138
Query: 610 SHLAM 624
++L++
Sbjct: 139 ANLSL 143
>03_01_0502 -
3779551-3779562,3779863-3780012,3780129-3780172,
3780256-3780319,3780422-3780655,3780765-3780908,
3781027-3781221,3781447-3781522,3781689-3781788,
3781955-3781988,3782076-3782160,3782226-3782290,
3782380-3782478,3782810-3782875,3785485-3785721
Length = 534
Score = 31.5 bits (68), Expect = 0.61
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +1
Query: 304 MLLFFQAVLDMRAVVAGAMLLLGQVVDALATPVVGVLAD----KYGTKKAWHLTGCILV 468
+L + L + + M L G + + P VG+ +D K+G ++ + LTGC+L+
Sbjct: 73 LLTPYVQTLGLSHALTSFMWLCGPIAGMVVQPCVGLYSDRCTSKWGRRRPYILTGCVLI 131
>02_05_0242 +
27121152-27121316,27121404-27121515,27121616-27121728,
27122024-27122379,27122515-27122590,27122682-27122768,
27122885-27122965,27123060-27123092,27123335-27123388,
27123482-27123523,27123649-27123727,27123813-27123883,
27123958-27124047
Length = 452
Score = 31.5 bits (68), Expect = 0.61
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +1
Query: 388 LATPVVGVLADKYGTKKAWHLTGCILVTATFPLLFIRCWGCWFNENTQYLYWWMPLYYAV 567
+ TP+VG L+DKYG K L + A PL + C N + Y Y +YY V
Sbjct: 63 VVTPIVGNLSDKYGRKALMTLP---VTVAILPLFILAC-----NRSKVYFY----VYYVV 110
Query: 568 LII 576
++
Sbjct: 111 KVL 113
>02_05_1302 +
35567585-35567848,35568303-35568368,35568475-35568573,
35569028-35569061,35569147-35569246,35569738-35569813,
35569974-35570315,35570426-35570569,35570840-35571073,
35571149-35571212,35571297-35571340,35571431-35571601
Length = 545
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +1
Query: 286 AMWFSYMLLFFQAVLDMRAVVAGAMLLLGQVVDALATPVVGVLADK----YGTKKAWHLT 453
A+ S + + Q L + +A + L G + + P VGV +DK YG ++ + L
Sbjct: 77 ALQLSLLTPYIQT-LGIDHAMASFIWLCGPITGFVVQPCVGVWSDKCRSKYGRRRPFILA 135
Query: 454 GCILVTATFP 483
GC+++ P
Sbjct: 136 GCLMICFAGP 145
>04_03_0141 + 11767781-11767880,11767953-11769262
Length = 469
Score = 29.9 bits (64), Expect = 1.9
Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 11/143 (7%)
Frame = +1
Query: 94 KIVTVTYDYM*RIDELILSAILIL-DQDLRTWLRDDSRASYKRRWWRVSQNVLYGLG--- 261
+IVT+ DY + + + + D W+ D + S+ RR +R N+L G
Sbjct: 145 RIVTLKQDYNEDLIRQFYATVWVAEDYSEMEWMSDTLQCSFSRRQFRRLLNILLDFGDDL 204
Query: 262 ---HVYNDLCAAMWFSYMLLFFQ-AVLDMRAVVAGAMLL---LGQVVDALATPVVGVLAD 420
H +N L Y+ F++ V VAG + + ++V A P +G D
Sbjct: 205 HEEHPHNPLS----IDYLSQFYEDGVRYTHGNVAGLRTIPSVVNRIVRATILPRLGNNDD 260
Query: 421 KYGTKKAWHLTGCILVTATFPLL 489
G AWH+ I F ++
Sbjct: 261 IRGV--AWHVIDAISQARQFDIV 281
>04_01_0385 -
5095410-5095445,5095595-5095796,5095905-5095979,
5096460-5096484,5097032-5097137
Length = 147
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -2
Query: 510 ATPTSNEQQRECRCY*NASSQM--PCLLSSVFISQNSHNRGCK 388
A SN+Q R CRC + ++ PC + + SQN CK
Sbjct: 48 ARSMSNDQHRSCRCVKSNCVKLYCPCFSAYGYCSQNCRCTNCK 90
>12_01_0503 -
3981603-3981730,3982858-3983023,3983057-3983139,
3983250-3983301,3983497-3983654,3983756-3985617,
3986029-3986093,3986176-3986340,3986836-3986893,
3987479-3987590,3987661-3987712,3988080-3988140,
3988220-3988377,3988705-3988787,3988897-3988945,
3989122-3989185,3990225-3990317,3990410-3990543,
3991364-3991585,3991815-3991937,3992103-3992267,
3993064-3993450
Length = 1479
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = -3
Query: 473 AVTKMHPVKCHAFLVPYLSAKTPTTGVASASTTCPRSSIAPATTALMSRTA 321
+V+KM P+ A +A PTT A+A+ PR S A LM R A
Sbjct: 828 SVSKMPPLPSPAAASAAAAAAAPTTAAAAAAAPAPRPS---ARDMLMQRPA 875
>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 525 HTVFVLVDATILCGPNYIFPNWLGRGTNLTSG 620
H + L+ TI+CG + + PN LGR ++ G
Sbjct: 2295 HVLSHLILETIICGKSMLVPNILGRDDSMEIG 2326
>04_04_0625 +
26682725-26683066,26683555-26683659,26683790-26683951,
26684042-26684102,26684798-26684922,26685532-26685603
Length = 288
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -3
Query: 431 VPYLSAKTPTTGV-ASASTTCPRSSIAP 351
VP +S +TP+TG+ S ST C +++ P
Sbjct: 163 VPAMSGETPSTGMKGSGSTPCKKNNTVP 190
>01_01_0765 + 5917163-5918212
Length = 349
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +2
Query: 134 MN*FCRQYSSSTRTFGRGCGTIHVHRTREDGGVSVRTCFTD*GMFTTTSALRCGSHTC 307
M C + SSS+R G + E+GG S+R + T ++ +C H C
Sbjct: 275 MRALCLRRSSSSRRGGASATMVVEEAAEEEGGGSMRFARLGSTVSTRSAQCQCRKHQC 332
>05_07_0265 + 28783230-28783316,28784381-28785196
Length = 300
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 163 LDQDLRTWLRDDSRASYKRRWWRVSQNVLYGLGHV 267
LD D W + A Y +R +S V+YG GH+
Sbjct: 233 LDADRAVWRIGEELAGYVQRSGPLSHVVVYGAGHL 267
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,521,843
Number of Sequences: 37544
Number of extensions: 438425
Number of successful extensions: 1168
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -