Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6i11
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    29   0.45 
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      27   3.1  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   5.5  
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    26   5.5  

>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
 Frame = +2

Query: 410 MTGAILVVSALMLTV--FANSFVTYIITFSLLYGAGYGITSASNALALNTYWKERR--RL 577
           +T A +V   +++T+    +S+ +YI T +LL      IT A        Y KE +  R+
Sbjct: 119 VTSAFIVAWGILMTLTCLVHSYASYIATRTLLGILESVITPAFVLFIAQWYRKEEQFFRM 178

Query: 578 ATGLSWTATGLGPMVWPYVITGLY 649
           A  ++W   GLG ++   +  GLY
Sbjct: 179 AFLVAW--NGLGGLIGGSMSYGLY 200


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 363 KPCRTRHAPTH-EFRAECILMIVVVCELEMPSLANLSRNRSPN 238
           KPC  R  P +      CIL+++ +  L  P L +L+++ SP+
Sbjct: 130 KPCNNRTFPNYMGIVKSCILIVLTLAGLS-PILMSLTKSTSPD 171


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 497 LYGAGYGITSASNALALNTYWKERRRLATGLSWTATGLGPMVWP 628
           L+ A +G+++AS A  L TY K +       +W    L  +V P
Sbjct: 322 LHCATFGVSNASTAKVLRTYLKTKSEFLR--TWLLKALSHLVAP 363


>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 181 PTPTTIGRYKITISFHFSFQLLRLCHSANYLF 86
           PT   +G+Y   +S   S  L+R C  A  LF
Sbjct: 170 PTLHLLGKYDTVLSTETSTTLVRACKDAQVLF 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,742,503
Number of Sequences: 5004
Number of extensions: 56191
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)