Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6i11
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1346 + 25927043-25927333,25927867-25927929,25928005-259280... 31 0.61
01_07_0303 + 42615578-42615709,42616273-42616312,42616393-426164... 31 1.1
12_01_0792 + 7244527-7244845,7245457-7245587 29 2.5
04_04_0868 + 28874332-28875747 29 4.3
11_01_0612 + 4902197-4902929,4903443-4904071 28 5.7
04_04_0396 + 24915880-24916222,24916318-24916577,24916689-249167... 28 5.7
05_03_0082 + 8252844-8253035,8253517-8253792,8253905-8254057 28 7.5
04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726... 28 7.5
01_01_0497 - 3664349-3664687 28 7.5
04_04_0331 + 24472853-24473212,24474112-24474253,24474948-24475123 27 9.9
>07_03_1346 +
25927043-25927333,25927867-25927929,25928005-25928093,
25928177-25928237,25928848-25929009,25929099-25929257,
25929351-25929427,25929515-25929654,25929752-25929783,
25929877-25929951,25930268-25930340,25930456-25930544,
25930781-25930933,25931023-25931127
Length = 522
Score = 31.5 bits (68), Expect = 0.61
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 333 AWVRDASCTVWQTAP 377
AW+RDA CT+WQ P
Sbjct: 86 AWLRDAGCTLWQVLP 100
>01_07_0303 +
42615578-42615709,42616273-42616312,42616393-42616477,
42616634-42616813,42618274-42618354,42618890-42619011,
42619867-42620723,42621656-42621897,42622107-42622200,
42622306-42622476,42622695-42622740,42624101-42624111,
42624141-42624392
Length = 770
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1
Query: 544 FEYLLEGKKKISNRPVVDRNRLRSHG 621
FEY LE +KKIS R ++DR+ + S G
Sbjct: 596 FEYDLEKEKKISLRTLIDRSAVESFG 621
>12_01_0792 + 7244527-7244845,7245457-7245587
Length = 149
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/75 (32%), Positives = 33/75 (44%)
Frame = -3
Query: 546 KAKALDALVIPYPAP*SNEKVMI*VTKLFANTVSISALTTSMAPVIDT*R*VNVLNTGPF 367
KA AL +PY AP SN V+ T A+T + L ++ + V +T
Sbjct: 30 KAATSAALYMPYYAPTSNPVVLADWTNYAASTRVMQLLPCAIVALATYPVVTLVAHT--I 87
Query: 366 AKPCRTRHAPTHEFR 322
R +H P HEFR
Sbjct: 88 EHRMRAKHRPPHEFR 102
>04_04_0868 + 28874332-28875747
Length = 471
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 161 PDGGWGWMVVIAAGLSNLSALPI 229
PDGGWG ++ GL+N + L I
Sbjct: 221 PDGGWGGSFLLMPGLANTTRLVI 243
>11_01_0612 + 4902197-4902929,4903443-4904071
Length = 453
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Frame = +1
Query: 277 HFQFADHNNHQYTFSPELMRGCVTRPARFGKRPRIQNIY-----LPSSVD-DGSHTCRQR 438
HF A N+ T S L+R C+ P+ G+R Q + LP D DG +
Sbjct: 270 HFAAASPENNPETDSSSLLRRCLRSPSSHGRRTPTQLLLEADPSLPFRPDGDGEYPIHVA 329
Query: 439 ADANRVR 459
A A +R
Sbjct: 330 AAAGNLR 336
>04_04_0396 +
24915880-24916222,24916318-24916577,24916689-24916784,
24916889-24917059,24917262-24917975
Length = 527
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/51 (23%), Positives = 23/51 (45%)
Frame = +2
Query: 473 TYIITFSLLYGAGYGITSASNALALNTYWKERRRLATGLSWTATGLGPMVW 625
++++ +YGA G+ A +A YWK+ +R+ + G W
Sbjct: 37 SFVLAVVAVYGACQGVGDAVGGVAAGYYWKDVQRVQPSAAQFYQGFVSAPW 87
>05_03_0082 + 8252844-8253035,8253517-8253792,8253905-8254057
Length = 206
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 196 CRLVKPVSLAHIPAVRAPIPR 258
C L KPV+LA +P R P P+
Sbjct: 124 CALFKPVALAILPMPRVPYPK 144
>04_01_0567 -
7263744-7263922,7264020-7264259,7264919-7264982,
7265088-7265393,7265652-7265866,7266195-7266489,
7266596-7266655,7267091-7267717,7268510-7268596,
7269292-7269612,7270051-7270224,7272806-7275022
Length = 1594
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Frame = -3
Query: 267 ANLSRNRSPNCWNMGKADRFD------KPAAMTTIQPQPPSGGIKSPSLFTLVFNCFVFA 106
A LSR+R N G D + KP+ + + P PP GG++ +L CF A
Sbjct: 66 ARLSRSRREGIAN-GNGDHAEEEPLLAKPSVVAAVPPPPPRGGLRH-ALALAASVCFAAA 123
Query: 105 ILQII 91
L ++
Sbjct: 124 SLVLL 128
>01_01_0497 - 3664349-3664687
Length = 112
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 503 GAGYGITSASNALALNTYWKERRRLATGLSWTA 601
GAG G+T + ++Y + RRR+ GL+ A
Sbjct: 46 GAGDGVTMGGGGASASSYRRNRRRMEGGLAAAA 78
>04_04_0331 + 24472853-24473212,24474112-24474253,24474948-24475123
Length = 225
Score = 27.5 bits (58), Expect = 9.9
Identities = 8/12 (66%), Positives = 11/12 (91%), Gaps = 1/12 (8%)
Frame = +1
Query: 490 LVTLWCWV-WYY 522
+VTLWCW+ WY+
Sbjct: 178 VVTLWCWILWYF 189
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,713,757
Number of Sequences: 37544
Number of extensions: 401767
Number of successful extensions: 1031
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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