Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6h24
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    27   1.5  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   4.5  
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch...    26   4.5  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    25   6.0  
SPAC13G7.06 |met16||phosphoadenosine phosphosulfate reductase|Sc...    25   6.0  
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    25   7.9  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   7.9  

>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 470 GLSFSAPPGYLRPTTRDSHHYVHRS 544
           GLSFS  PGY+ P+++  HH   RS
Sbjct: 59  GLSFS--PGYISPSSQSPHHGPVRS 81


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 408  WNVKAYLYSDSMLVLPD 458
            WN+KA LY D    +PD
Sbjct: 1463 WNMKANLYKDEAATVPD 1479


>SPBC30D10.08 |mgm101||mitochondrial nucleoid
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 495 PGGAENDSPGCPSRAGPACCRSIGM 421
           P G    S GC S A   CC+ +G+
Sbjct: 194 PEGIATASEGCKSNALMRCCKDLGV 218


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
 Frame = +3

Query: 24  KPHIHSSDGSQVGTMVGTNNLRSNLSDVFSEKQLSQIVKSSVGEGGKVIDGYVKPVADGI 203
           KP   S D    G  +  ++  S L     EK+++ I+K SV    K+I+  +       
Sbjct: 400 KPESESYDVEMNGKSLEDSDSLSELYLTNEEKKMASIIKDSVNVQIKLIESKLSHF---- 455

Query: 204 AGFLGDHFKV-TLEVQVSGQVTCLH-LFVKRLPVNNKPKAE 320
             +L  H ++ + E+    Q T    L++KR   N + K E
Sbjct: 456 -DYLDQHIRLKSQELDAFAQATYREKLYMKRECQNARKKIE 495


>SPAC13G7.06 |met16||phosphoadenosine phosphosulfate
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 266

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +2

Query: 386 GRRRSESMERQSIPILRQHAGPARLGHPGLSFS 484
           GRRRS+  ER S+PI+ Q  GP    +P  ++S
Sbjct: 156 GRRRSQGGERGSLPIV-QLDGPVLKINPLANWS 187


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -2

Query: 262 TCPLTCTSKVTLK*SPRNPAMPSATGLTYPSITFPPSPTDDLTI*LNCFS 113
           T P   TS +  +  P NP  P+ + +  P+   P +P    T  + C S
Sbjct: 309 TAPPQVTSPMVSQTQPVNPITPNYSSIPLPAERNPKTPQSFSTNIVQCAS 358


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 86   QIVSANHCADLRSVRAVDVGLYKLI 12
            QI+S N  A L      D+GLY++I
Sbjct: 1222 QIISTNSIAPLLHSYLADIGLYQMI 1246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,385
Number of Sequences: 5004
Number of extensions: 43116
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)