Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6h24
         (572 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41023-2|AAA82341.1|  335|Caenorhabditis elegans Sphingomyelin s...    29   2.3  
U53141-3|AAA96105.3|  596|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AM748821-1|CAO72175.2|  596|Caenorhabditis elegans hexosaminidas...    28   4.1  
Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z81142-8|CAO82053.1|  370|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z71177-5|CAA94871.2|  531|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF016682-2|AAO38604.1|  891|Caenorhabditis elegans Argonaute (pl...    27   9.5  
AF016682-1|AAB66187.2|  910|Caenorhabditis elegans Argonaute (pl...    27   9.5  

>U41023-2|AAA82341.1|  335|Caenorhabditis elegans Sphingomyelin
           synthase protein 2 protein.
          Length = 335

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 469 RAIVLGTTWIPSTYHTRQSPLRPSLVST 552
           RA++LG T++P ++H R    +P +  T
Sbjct: 146 RAVILGVTFLPPSFHNRDEICQPQVNRT 173


>U53141-3|AAA96105.3|  596|Caenorhabditis elegans Hypothetical
           protein C14C11.3 protein.
          Length = 596

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/54 (20%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = +3

Query: 78  NNLRSNLSDVFSEKQLSQIVKSSVGEGGKVIDGYVKPV--ADGIAGFLGDHFKV 233
           ++LR+++ D++ E  + + +  ++GE  + + GY++ +   D +  +   HF +
Sbjct: 541 SDLRASMKDLYFENTIDEFIYENLGEMSEKLHGYLEEIQRLDKLRAWPKRHFPI 594


>AM748821-1|CAO72175.2|  596|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 596

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/54 (20%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = +3

Query: 78  NNLRSNLSDVFSEKQLSQIVKSSVGEGGKVIDGYVKPV--ADGIAGFLGDHFKV 233
           ++LR+++ D++ E  + + +  ++GE  + + GY++ +   D +  +   HF +
Sbjct: 541 SDLRASMKDLYFENTIDEFIYENLGEMSEKLHGYLEEIQRLDKLRAWPKRHFPI 594


>Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical
           protein C29E6.1a protein.
          Length = 812

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -2

Query: 232 TLK*SPRNPAMPSATGLTYPSITFPPSPT 146
           T K SP+    PS T  T  S T PPS T
Sbjct: 420 TTKTSPKPTTSPSTTTSTTTSTTIPPSTT 448


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -2

Query: 262 TCPLTCTSKVTLK*SPRNPAMPSATGLTYPSITFPPSPTDDLT 134
           T P+  TS  T   +P NP  P+      P  T  P+ T   T
Sbjct: 651 TAPVNPTSSTTAPTAPVNPTSPTTAPTVPPVTTTTPTTTTSTT 693


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -2

Query: 262 TCPLTCTSKVTLK*SPRNPAMPSATGLTYPSITFPPSPTDDLT 134
           T P+  TS  T   +P NP  P+      P  T  P+ T   T
Sbjct: 707 TAPVNPTSSTTAPTAPVNPTSPTTAPTVPPVTTTTPTTTTSTT 749


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -2

Query: 262 TCPLTCTSKVTLK*SPRNPAMPSATGLTYPSITFPPSPTDDLT 134
           T P+  TS  T   +P NP  P+      P  T  P+ T   T
Sbjct: 530 TAPVNPTSSTTAPTAPVNPTSPTTAPTVPPVTTTTPTTTTSTT 572


>Z81142-8|CAO82053.1|  370|Caenorhabditis elegans Hypothetical
           protein ZK1037.13 protein.
          Length = 370

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 421 HTYTPTACWSCPTWTSRAIVLG 486
           H Y P AC SC T+  RAI  G
Sbjct: 53  HRYGPMACLSCITFFRRAISSG 74


>Z71177-5|CAA94871.2|  531|Caenorhabditis elegans Hypothetical
           protein AC3.8 protein.
          Length = 531

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +3

Query: 48  GSQVGTMVGTNNLRSNLSDVFSEKQLSQIVKSSVGEGGKVIDGYVKPVADGIAGFLGDHF 227
           G+     +  N  +     + ++K+L Q + S+        DGYV    D  + +LGDH 
Sbjct: 109 GAMAPMFILYNEFKPMCDRILTDKELHQWILSNK------FDGYVAESFDFCSLYLGDHL 162

Query: 228 KVTL 239
           K+ L
Sbjct: 163 KLNL 166


>AF016682-2|AAO38604.1|  891|Caenorhabditis elegans Argonaute
           (plant)-like gene protein2, isoform b protein.
          Length = 891

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 386 GRRRSESMER-QSIPILRQHAGPARLGHPGLSFSAPPGYLRP 508
           GR R    E  QSI ++ +H    +    G SF  PPG ++P
Sbjct: 169 GRVRQVPHEAVQSIDVILRHLPSLKYTPVGRSFFTPPGVMKP 210


>AF016682-1|AAB66187.2|  910|Caenorhabditis elegans Argonaute
           (plant)-like gene protein2, isoform a protein.
          Length = 910

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 386 GRRRSESMER-QSIPILRQHAGPARLGHPGLSFSAPPGYLRP 508
           GR R    E  QSI ++ +H    +    G SF  PPG ++P
Sbjct: 188 GRVRQVPHEAVQSIDVILRHLPSLKYTPVGRSFFTPPGVMKP 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,797,596
Number of Sequences: 27780
Number of extensions: 251063
Number of successful extensions: 838
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)