Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6h23
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 29 0.58
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 29 0.76
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.0
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc... 28 1.3
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 28 1.3
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 27 1.8
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 1.8
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe... 27 2.3
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch... 27 2.3
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 27 2.3
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 3.1
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c... 27 3.1
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 26 4.1
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 4.1
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 26 5.4
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 26 5.4
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 26 5.4
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 26 5.4
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 9.4
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 25 9.4
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 25 9.4
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 29.1 bits (62), Expect = 0.58
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +1
Query: 271 EGEWEQVVKDTFYTHAKKACDEANRIKKEKEEADKRLKEIQQRKEQERLANDFEPATVTE 450
E + + +++ A+ A +EANR E+EEA KR I++R R A + E + E
Sbjct: 783 EQKLAEAIREAEEEAARAAEEEANRELHEQEEAQKR--AIEERTRAAREAKEREQREMAE 840
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 28.7 bits (61), Expect = 0.76
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -1
Query: 299 SLTTCSHS-PSRPPVKKSVFLDKKLTIVFSRSFTPPSCCCA-IARSMESNLSGS 144
+L+ +H+ P PV + LD I+ R F PP C +ARS++S+ S S
Sbjct: 395 ALSDLAHNIPPLLPVIQERLLDMLSKILSGRPFIPPGCPPQYVARSLKSSKSAS 448
>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 608
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 100 VPVTYRLNTKVNMANDPERFDSMLLAMAQQHEGGVKDLL 216
V Y LN+K+N+ N PE+ S L + +KD+L
Sbjct: 500 VEKVYDLNSKINLKNIPEQSISRLSTLKWNEGTTIKDVL 538
>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
Taz1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 663
Score = 27.9 bits (59), Expect = 1.3
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Frame = +1
Query: 196 GGVKDLLNTIVSFLSRKTDFFTGGREGEWEQVVKDTFYTHAKKACDE--ANRIKKEKEEA 369
G V L+ I LS T + ++ + + + AK + ANR K +
Sbjct: 432 GLVSSALDKITGLLSADNLSETVSQARDFSHTLSKSLKSRAKSLSQKEAANRSKLIAKRG 491
Query: 370 DKRLKEIQQRKEQERLANDFEP 435
D +E EQ+ L+ DF P
Sbjct: 492 DNLRREASLSSEQDDLSEDFPP 513
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 268 REGEWEQVVKDT---FYTHAKKACDEANRIKKEKEEADKRLKEIQQRKEQERLAND 426
+ G+ E+ +KD+ F + + + +++ KEE K + E+ R E +LA +
Sbjct: 1338 QRGDLEKALKDSEKNFLRKEAEMTENIHSLEEGKEETKKEIAELSSRLEDNQLATN 1393
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 246 FSRQKANYCVQQIFYAAFVLLCHS*EH-GIKSFRIVCHIYFSI 121
FSR Y V I A+ + LC + EH G KS R++ FS+
Sbjct: 138 FSRLTCAYFVLSILDASLIYLCFTSEHLGDKSTRMLFVCEFSV 180
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +1
Query: 238 SRKTDFFTGGREGEWEQVVKDTFYTHAKKACDEANRIKKEKEEADKRLKEIQQRKEQERL 417
+RK + G E E+ ++ + EA R+K+EKE + ++ ++ +EQE++
Sbjct: 62 NRKKRIYNGSAEAGKEKKLQKQRAQEERIRQKEAERLKREKERQQR--EQEKKLREQEKI 119
Query: 418 A 420
A
Sbjct: 120 A 120
>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 248
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 109 TYRLNTKVNMANDPERFDSMLLAMAQQHEGGVKDL 213
+Y LN V N+P FDS ++ EG ++ L
Sbjct: 123 SYELNDFVTNENEPVSFDSYMVPEEDLEEGSLRQL 157
>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 214 LNTIVSFLSRKTDFFTGGREGEWEQVVKDTFYTHAKKACDEANRIKKE--KEEADKRLKE 387
L+T+ +FL TDF T + + ++ D + A+ + R KE K E ++LK
Sbjct: 102 LDTVANFLDFSTDFSTLSTKKDETEIAPDCLHYIAELLFQKKEREVKEKWKNELTEKLKT 161
Query: 388 I 390
+
Sbjct: 162 L 162
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 331 DEANRIKKEKEEADKRLKEIQQRK-EQERLANDFEPATVTE 450
+E N+ K++A L+E +++K EQ+RL+ FE T E
Sbjct: 523 EEYNKWFARKQQARVELEEQRRKKKEQDRLSGKFEKMTQKE 563
Score = 26.6 bits (56), Expect = 3.1
Identities = 22/82 (26%), Positives = 36/82 (43%)
Frame = +1
Query: 184 QQHEGGVKDLLNTIVSFLSRKTDFFTGGREGEWEQVVKDTFYTHAKKACDEANRIKKEKE 363
++H+ K T+VSF+ TG + ++ Q+ KK+ + KK K
Sbjct: 254 EKHKSDNKKTFGTLVSFVEPT---ITGSEQSDYRQI-------KIKKS-----KKKKSKS 298
Query: 364 EADKRLKEIQQRKEQERLANDF 429
+ KRL E+ E E +DF
Sbjct: 299 DRRKRLVELDAENENENDPSDF 320
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 316 AKKACDEANRIKKEKEEADKRLKEIQQRKEQE 411
A+KA + + + K+ ++RLK Q++K+QE
Sbjct: 625 AQKALEAKRQEEARKKREEQRLKREQEKKQQE 656
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +1
Query: 316 AKKACDEANRIKKEKEEADKRLKEIQQRKEQERLANDFE 432
A++A +A K++ EEA K+ +E + ++EQE+ + E
Sbjct: 621 AEQAAQKALEAKRQ-EEARKKREEQRLKREQEKKQQELE 658
>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 259 TGGREGEWEQVVKDTFYTHAKKACDEANRIKKEKE-EADKRLKEIQQRKEQER 414
T R+ +EQVV + AKK + I K E + KR++ +QRK + R
Sbjct: 318 TSARKLAFEQVVHASAAKAAKKKVKSSGDISKLSESDQKKRMERERQRKMRRR 370
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 26.2 bits (55), Expect = 4.1
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Frame = +1
Query: 103 PVTYRLNTKVNMANDPERFDSMLLAMAQQHEGGVKDLLNTIVSFLSRKTD----FFTGGR 270
P Y+L + + N+ F + + E V DL+N S+L+ D +T +
Sbjct: 275 PAYYKLIAQEAVLNNYTTFAEYYMDLLDNSESNVDDLINKASSWLNNSVDTWNVIYTLDK 334
Query: 271 EGEWEQVVKDTFYTHAKKACDEANRIKKEKEEADKRLKEIQ 393
E + D A+ DEA++ K EA +KE Q
Sbjct: 335 SPERLLKLADIKMDLAQIVQDEASQDNYLK-EACNAIKEAQ 374
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 289 VVKDTFYTHAKKACDEANRIKKEKEEADKRLKEIQQRKEQERLANDF 429
++ D ++ + N + ++K E ++RLKEIQ KE E N F
Sbjct: 974 ILIDELESYRSNQFNYQNNLVQDKNELEERLKEIQ--KELEVYNNHF 1018
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +1
Query: 526 SGDSSDVTEPATPEEDDDPKE--KGKLKPNAGNGCDLEH 636
SGD+ D + P EDDD E G+++ +G D+++
Sbjct: 425 SGDADDFQANSNPFEDDDKLEGANGEMEVTFTSGFDVDN 463
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 334 EANRIKKEKEEADKRLKEIQQRKEQERL 417
E R+K E+E K L E +++KE+ER+
Sbjct: 126 ERQRLKDEEERRKKELME-KEKKEKERI 152
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = +1
Query: 223 IVSFLSRKTDFFTGGREGEWEQVVKDTFYTHAKKACDEANRIKKEKEEADKRLKEI 390
I F+ + F+ + +WE+++K K A R + +EE + K+I
Sbjct: 479 IDEFMDAELKFYKECQTSQWEEIIKSVHECIYKWAQTNLQRWLRTREELENLSKDI 534
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = +1
Query: 343 RIKKEKEEADKRLKEIQQRKEQERLAND 426
+ K+++EA+KR ++++ E+ERL +
Sbjct: 39 KTNKKEQEAEKRKAALERKAERERLEKE 66
>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 320
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 458 IRKQRS*RKILKRTKMKRMQK 520
++KQ+ RKILK +KR+ K
Sbjct: 50 VQKQKENRKILKDVSLKRLSK 70
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 352 KEKEEADKRLK--EIQQRKEQERLANDFE 432
K+K E DKR + E+E+L NDFE
Sbjct: 121 KDKFEKDKRAAVCPTTTKSEEEKLENDFE 149
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = +1
Query: 301 TFYTHAKKACDEANRIKKEKEEADKRLKEIQQRKEQERLANDFEPATV 444
T +T + + + E + DK LKE + + + + ND+E + V
Sbjct: 57 TSFTEQIETSETSKTQDSEGNKVDKNLKENKSIRRKRSIDNDYELSNV 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,070,549
Number of Sequences: 5004
Number of extensions: 33461
Number of successful extensions: 176
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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