Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6h20
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    38   0.002
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    31   0.10 
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    29   0.53 
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.2  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.2  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   2.8  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    26   3.8  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    25   8.7  
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    25   8.7  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   8.7  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    25   8.7  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   8.7  

>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +1

Query: 100 VRRWWRALVSELLATAFLVWLGVSSVVPYKGKEAVVLSHPA--FAFGFVVLGNAMAFGPT 273
           +R ++R   +E L T  LV  GV S +          S  +  FA+GF  +      G  
Sbjct: 306 IRHFFREGFAEFLGTLVLVVFGVGSNLQATVTNGAGGSFESLSFAWGFGCMLGVYIAGGI 365

Query: 274 SGAHMNPAVTLAAAL 318
           SG H+NPAVT++ A+
Sbjct: 366 SGGHVNPAVTISLAI 380


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
 Frame = -1

Query: 314 AAASVTAGFMCAPDVGPNAIALPSTTNPK-AKAGCDSTTASFPLYGTTELTPSHTRNAVA 138
           A++S+T+  + +  +  +++A  STT+   A +  +STT++ P   T+  T S   +  A
Sbjct: 130 ASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATP---TSSATSSSLSSTAA 186

Query: 137 SSSETNA 117
           S+S T++
Sbjct: 187 SNSATSS 193


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 263 NAIALPSTTNPKAKAGCDSTTASFPLYGTTELTPSHTRNAVASSSETNAR 114
           N +   +T    A  G    T+S   YG+T  +  H RN++A S+  + +
Sbjct: 513 NVVTTQTTHEEDALIGSSINTSSHQHYGSTLNSTPHRRNSIALSNRAHVK 562


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = -1

Query: 260 AIALPSTTNPKAKAGCDSTTASFPLYGTTELTPSHTRNAVASSSETNARHHRRTQPEKPR 81
           +++  S   P+  A  D+T++S P   TTE   S T   + SS + +A     T P    
Sbjct: 413 SLSKESPVEPEKPALPDATSSSTP---TTENKESWTNQGIKSSQQRSANASPATSPSNQA 469

Query: 80  GVSSS 66
            + +S
Sbjct: 470 SIHAS 474


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
 Frame = -1

Query: 323 PCSAAASVTAGFMCAPDVGPNAIALPSTTNPKAKAGCDS-TTASFPLYGTTELTPSHTRN 147
           P + +A+V  G   A +          T   K  AG  S TT   P   TT+ TP     
Sbjct: 524 PGTTSAAVPGGKKSAIEAAAPIPTSADTVESKHAAGSGSATTIPSPGSATTKPTPGSATT 583

Query: 146 AVASSSETNARHHRRTQPEKPRGVSSSVE 60
                S T       T+P    G +++ E
Sbjct: 584 KPTPVSATEEHAAGTTKPAPAAGATATAE 612


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/73 (17%), Positives = 41/73 (56%)
 Frame = -1

Query: 335 GDMRPCSAAASVTAGFMCAPDVGPNAIALPSTTNPKAKAGCDSTTASFPLYGTTELTPSH 156
           G ++   +++SV++    +    P++ +  +TT+P + +   S+++S     ++  + S 
Sbjct: 121 GVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSS 180

Query: 155 TRNAVASSSETNA 117
           + ++ +SSS +++
Sbjct: 181 SSSSSSSSSSSSS 193


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = -1

Query: 248 PSTTNPKAKAGCDSTTASFPLYGTTELTPSHTRNAVASSS 129
           PS+++  A +   STT+S  L  +T LT S + +AV+S++
Sbjct: 110 PSSSSSSAASSTTSTTSSSSLVSSTTLT-SSSPSAVSSTT 148


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 52  HMPSTDEDTPRGFSGWV 102
           + P   +DTP+G S W+
Sbjct: 565 YAPQASDDTPKGLSKWI 581


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 113 HHRRTQPEKPRGVSSSVEGMW 51
           H R  + E P G  SS+EG W
Sbjct: 74  HQRIGKKETPSGGRSSIEGSW 94


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +1

Query: 268 PTSGAHMNPAVTLAAALQGRMS----PALAAAYTVAQVXXXXXXXXXXXXVTPASALGTD 435
           P  G + +P  T ++A+ G +S    P   A+ T+A+V             TP++A+G+ 
Sbjct: 235 PNRG-YFSPMHTYSSAVPGPISVPSAPYGRASSTIAEVSPMYGSHAAPYASTPSAAVGSS 293

Query: 436 EGCT 447
            G T
Sbjct: 294 RGST 297


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -1

Query: 233 PKAKAGCDSTTASFPLYGTTELTPSHTRNAVASSSET 123
           P + +   +  +S+P+  + +L+   TR+ +ASS  T
Sbjct: 213 PSSASAYQAGYSSYPVRSSPQLSHEDTRHGIASSGST 249


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 19/72 (26%), Positives = 30/72 (41%)
 Frame = -2

Query: 301  SRPGSCAHPTSARTPSHCRAPQTRKQKRDVTARRPPSLCTAPRS*RRATRGTPWPAARRP 122
            S+P   A+P S    +  R P    Q R  T +    + +   + ++AT  T   +   P
Sbjct: 1007 SKPAPMANPVSTAQQTQNRPPAPAMQARPNTTQAAAPVTSTTTTIKQAT--TVSASKPAP 1064

Query: 121  TLATIAAPSRKN 86
            +  T AA S  N
Sbjct: 1065 STVTSAASSPSN 1076


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,897,615
Number of Sequences: 5004
Number of extensions: 30402
Number of successful extensions: 130
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)