Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6h19
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   2.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.1  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   3.8  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   3.8  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   3.8  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   3.8  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   3.8  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   3.8  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   3.8  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   3.8  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    22   5.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   6.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.7  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 13/59 (22%), Positives = 25/59 (42%)
 Frame = +1

Query: 133 WLTAARSSKTIAFHLKTGQNSNLRLRSVRCRCWKSTASSTLRAPPSAGTSVASTGSPGP 309
           WL    S+     +    ++     +S+ C+C+    ++TLR   S G+ +A      P
Sbjct: 49  WLGYCNSAINPCIYALFSKDFRFAFKSIICKCFCKRRTNTLRR-GSDGSQLAMRNDRSP 106


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 13/59 (22%), Positives = 25/59 (42%)
 Frame = +1

Query: 133 WLTAARSSKTIAFHLKTGQNSNLRLRSVRCRCWKSTASSTLRAPPSAGTSVASTGSPGP 309
           WL    S+     +    ++     +S+ C+C+    ++TLR   S G+ +A      P
Sbjct: 497 WLGYCNSAINPCIYALFSKDFRFAFKSIICKCFCKRRTNTLRR-GSDGSQLAMRNDRSP 554


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 95  PRQGPRREPEAAAGLRRP 148
           P    RREPEA  G  RP
Sbjct: 112 PHPRLRREPEAEPGNNRP 129



 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 95  PRQGPRREPEAAAGLRRP 148
           P    RREPEA  G  RP
Sbjct: 138 PHPRLRREPEAEPGNNRP 155


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 555 GSRTCRRTQSRPRSTCQARYDR 490
           G R+C R +SR       RYD+
Sbjct: 249 GERSCSRDRSREYKKKDRRYDQ 270


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 555 GSRTCRRTQSRPRSTCQARYDR 490
           G R+C R +SR       RYD+
Sbjct: 249 GERSCSRDRSREYKKKDRRYDQ 270


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 555 GSRTCRRTQSRPRSTCQARYDR 490
           G R+C R +SR       RYD+
Sbjct: 249 GERSCSRDRSREYKKKDRRYDQ 270


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 555 GSRTCRRTQSRPRSTCQARYDR 490
           G R+C R +SR       RYD+
Sbjct: 249 GERSCSRDRSREYKKKDRRYDQ 270


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 555 GSRTCRRTQSRPRSTCQARYDR 490
           G R+C R +SR       RYD+
Sbjct: 249 GERSCSRDRSREYKKKDRRYDQ 270


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 555 GSRTCRRTQSRPRSTCQARYDR 490
           G R+C R +SR       RYD+
Sbjct: 249 GERSCSRDRSREYKKKDRRYDQ 270


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 555 GSRTCRRTQSRPRSTCQARYDR 490
           G R+C R +SR       RYD+
Sbjct: 249 GERSCSRDRSREYKKKDRRYDQ 270


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 186 PEFKPKTPFGQMPVLEIDGK 245
           P  KP+TPF    +L ++ K
Sbjct: 8   PNRKPRTPFTTQQLLSLEKK 27


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +1

Query: 88  TISPSRPSARARGCCWLTAARSSKTIAFHLKTGQNSNLRLRSVRC 222
           T S  R  + AR  CW   + ++      L T Q    +LR  RC
Sbjct: 203 TDSDRRKGSIAR--CWSLDSTAASDEDISLTTHQQKRHKLRVTRC 245


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 216 QMPVLEIDGKQYAQSTAICRYLGRKYGLAGANDEEAFEI 332
           QM  ++++  +YA  TAI  +  R   L G   E+  EI
Sbjct: 465 QMYAMKVNNAEYALLTAIVIFSERPNLLEGWKVEKIQEI 503


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,640
Number of Sequences: 438
Number of extensions: 2646
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)